Detailed information of component protein


Summary

Component ID T6CP013169
Component protein type TssI
T6SS ID (Type) T6SS01013 experimental (Type i3)
Strain Citrobacter rodentium DBS100
Replicon chromosome
Sequence Protein sequence (770 a.a.); Nucleotide sequence (2310 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) E2R62_10405
Coordinate (Strand) 2127043..2129352 (-)
NCBI ID 1609536642
GenBank CP038008
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 5.6e-88 18..336
Phage_base_V PF04717.14 1.2e-13 392..459
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-769 MPLLLGDTALVISKLDGEEALSSLYSYVITAKTPANPLIPWQAASNVDLKALIGKEMTVTIELDGNGLGDIFAIGKDTREISGIVQRARYIGRDSNQALYEIVIRPWLHLAELTTDFKIFQKKTVVDIIDEVLGDYNFPLEKRLAGSYPLLDFQVQYGESDFNFIERLMEEWGIYWFFEHAEQYHKLILVDNVGAHKRFPSEAYHVVQYAADRPKMDQEYISQFHFQETITSGKWVTNDYDFTKSRADIMALDSKPRKTSFNEMEIFHWPGDYEQPNIGEQLARVRMEERGALGSRCEGSGELRGIACGCDFELVNYPVEKANREYMILRSHLVVEEINQVTDVDEFRYHCDFTVQPTTKIYRHPMTVPRPKTSGPQTAIVVGPDGEEIWTDEYGRVKVRFLWDRYGKNRESDSCWLRVSQAWAGNNFGGIYIPRIGHEVIVDFINGDPDRPLIIGSLYNNVTMPPWDLPVNATQSGLVSRTVGGGRSNFNGIRFEDKPGLEQYWEQAERNMTRLTKQNEEQTIGMNSNVNVGLSRNLFVGANYMSDVVGNSSAIIGGALAIQVGGGQTDNVALAKGINVGGAFMTTVGGYHSLAVGGASTTVAGGAMTLTAGGELVLSAKKIKIVGSEQVIIQGGTVELNPGDCSDNCGGGGGGGGAMIGLPGLPAIPSLFGVVLPLPLLPTPTPAPTTSTDTPTESPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETGNAIPEP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9697 - -


  Protein sequence: 770 a.a.    

>T6CP013169 CP038008:c2129352-2127043 [Citrobacter rodentium] [TssI]
MPLLLGDTALVISKLDGEEALSSLYSYVITAKTPANPLIPWQAASNVDLKALIGKEMTVTIELDGNGLGDIFAIGKDTRE
ISGIVQRARYIGRDSNQALYEIVIRPWLHLAELTTDFKIFQKKTVVDIIDEVLGDYNFPLEKRLAGSYPLLDFQVQYGES
DFNFIERLMEEWGIYWFFEHAEQYHKLILVDNVGAHKRFPSEAYHVVQYAADRPKMDQEYISQFHFQETITSGKWVTNDY
DFTKSRADIMALDSKPRKTSFNEMEIFHWPGDYEQPNIGEQLARVRMEERGALGSRCEGSGELRGIACGCDFELVNYPVE
KANREYMILRSHLVVEEINQVTDVDEFRYHCDFTVQPTTKIYRHPMTVPRPKTSGPQTAIVVGPDGEEIWTDEYGRVKVR
FLWDRYGKNRESDSCWLRVSQAWAGNNFGGIYIPRIGHEVIVDFINGDPDRPLIIGSLYNNVTMPPWDLPVNATQSGLVS
RTVGGGRSNFNGIRFEDKPGLEQYWEQAERNMTRLTKQNEEQTIGMNSNVNVGLSRNLFVGANYMSDVVGNSSAIIGGAL
AIQVGGGQTDNVALAKGINVGGAFMTTVGGYHSLAVGGASTTVAGGAMTLTAGGELVLSAKKIKIVGSEQVIIQGGTVEL
NPGDCSDNCGGGGGGGGAMIGLPGLPAIPSLFGVVLPLPLLPTPTPAPTTSTDTPTESPTETPTETPTETPTETPTETPT
ETPTETPTETPTETPTETPTETPTETPTETPTETPTETPTETGNAIPEP*

  Nucleotide sequence: 2310 bp    

>T6CP013169 CP038008:c2129352-2127043 [Citrobacter rodentium] [TssI]
ATGCCGTTATTGCTGGGCGATACCGCTCTGGTTATCTCTAAGCTGGATGGCGAAGAGGCGCTGTCGTCCCTGTACTCCTA
TGTGATTACGGCTAAAACCCCGGCTAACCCTTTAATTCCCTGGCAGGCCGCATCGAATGTCGATTTAAAAGCATTAATCG
GCAAAGAAATGACCGTCACCATTGAACTGGATGGTAACGGATTGGGGGATATTTTTGCCATTGGTAAAGATACCCGGGAA
ATATCAGGAATTGTGCAACGTGCGCGTTATATCGGACGCGATAGTAATCAGGCGCTCTATGAAATTGTGATTCGCCCATG
GCTGCATCTGGCAGAACTGACTACGGATTTTAAAATATTCCAGAAAAAAACCGTGGTGGATATTATTGATGAGGTGTTAG
GCGATTACAATTTCCCGTTAGAAAAAAGGCTGGCGGGAAGCTATCCGCTGCTGGATTTCCAGGTTCAGTATGGTGAAAGC
GACTTTAATTTTATTGAACGGTTAATGGAAGAGTGGGGGATTTATTGGTTCTTTGAACATGCCGAACAGTACCACAAACT
GATTCTGGTGGATAACGTCGGGGCGCATAAACGTTTCCCGAGTGAAGCTTATCATGTGGTTCAGTACGCAGCCGATCGTC
CGAAGATGGACCAGGAATATATCAGCCAGTTTCATTTTCAGGAAACCATTACCTCCGGGAAATGGGTCACCAATGATTAT
GATTTTACGAAATCACGTGCCGATATTATGGCGCTGGACAGCAAGCCGCGTAAAACCAGTTTTAACGAGATGGAGATCTT
CCACTGGCCAGGCGATTACGAGCAGCCCAATATCGGTGAGCAGCTGGCGCGGGTACGAATGGAAGAACGCGGGGCGCTGG
GGTCACGCTGCGAAGGTTCCGGTGAACTGCGCGGAATTGCCTGCGGGTGCGATTTTGAACTGGTGAATTACCCCGTCGAG
AAAGCGAACCGCGAATACATGATTTTGCGAAGCCATCTGGTGGTGGAAGAGATTAATCAGGTGACCGACGTGGACGAATT
CCGTTATCACTGCGATTTTACCGTTCAGCCAACCACCAAGATTTATCGCCACCCGATGACGGTGCCCAGGCCGAAAACCA
GCGGACCGCAAACGGCTATCGTTGTGGGTCCTGATGGCGAAGAGATCTGGACCGACGAATATGGCCGCGTAAAGGTACGT
TTTTTGTGGGATCGCTACGGTAAAAACCGGGAGTCCGACTCCTGCTGGCTACGTGTGAGCCAGGCCTGGGCCGGAAATAA
CTTTGGCGGGATCTATATTCCCCGTATCGGCCATGAAGTGATTGTCGACTTTATTAACGGCGATCCTGACCGACCGCTGA
TTATCGGCAGCCTGTACAACAACGTAACGATGCCGCCGTGGGATCTGCCGGTGAACGCTACGCAGAGCGGGCTGGTTAGC
CGCACCGTTGGCGGTGGGCGCAGCAACTTTAACGGCATTCGCTTTGAAGATAAGCCCGGGCTTGAGCAGTACTGGGAACA
GGCCGAGCGCAATATGACTCGTTTAACCAAGCAAAACGAGGAGCAGACCATCGGCATGAATTCCAACGTGAATGTCGGTC
TGTCACGAAATCTGTTCGTTGGCGCGAACTATATGTCGGATGTGGTCGGCAACAGTAGCGCCATCATCGGCGGCGCGCTG
GCCATTCAGGTGGGCGGAGGCCAGACCGATAACGTTGCGCTGGCAAAGGGAATTAACGTCGGCGGCGCGTTTATGACGAC
CGTTGGCGGCTATCACTCGCTGGCTGTCGGCGGCGCAAGCACCACCGTTGCGGGAGGGGCGATGACGCTCACTGCAGGCG
GTGAACTGGTGCTCTCGGCGAAGAAGATCAAAATCGTCGGTTCCGAACAGGTCATTATTCAGGGCGGCACGGTCGAGCTT
AACCCTGGCGACTGCAGCGATAACTGCGGCGGCGGCGGTGGGGGCGGTGGCGCAATGATTGGCCTGCCGGGCCTGCCTGC
GATTCCATCGCTGTTTGGCGTTGTGCTTCCGTTACCGCTGCTTCCGACGCCAACGCCTGCGCCTACGACATCAACGGACA
CGCCAACGGAATCCCCGACGGAGACGCCAACAGAAACCCCAACGGAGACGCCAACGGAAACCCCGACGGAGACGCCAACG
GAAACCCCGACGGAGACGCCAACGGAAACCCCGACGGAGACGCCAACGGAAACTCCGACGGAGACGCCAACGGAAACCCC
GACGGAAACCCCAACAGAGACACCAACGGAAACCCCGACGGAGACAGGCAACGCAATTCCTGAACCTTAA