Detailed information of component protein


Summary

Component ID T6CP013170
Component protein type TssL
T6SS ID (Type) T6SS01013 experimental (Type i3)
Strain Citrobacter rodentium DBS100
Replicon chromosome
Sequence Protein sequence (452 a.a.); Nucleotide sequence (1356 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) E2R62_10420
Coordinate (Strand) 2133898..2135253 (-)
NCBI ID 1609533863
GenBank CP038008
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 3e-49 79..283
OmpA PF00691.22 3.8e-17 346..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-451 MKDDLNLQLSAEPAEDEGSSPQALGRFLLDEQGEWIQEPEATSKEETGPVGEHTARGEHALKSESVQQRILRVKAAENPLLEAAQPLLRALGDMPEQINDITHVEILKNTLKSQITLFGVVCDEVNIPWKKMAIVRYCLCTALDEAAHTTAWGLEAGWSQSNLLNHFEGDNDGGNKFFLLVGRLSMNPTEFADVLEVLLRILGLGFEGRYSIIEDGDRQLSKIRQRLLTLIQSTRNTTPPALSPHGLQPHGPAAREKLAIPVRLSALCAGVLVVSSFLWCKFWLLSRSDGITNDIYAMQNFSVPVVQPAMRLKLAVLLRNEIRQQLLSVDENQKQSKVVLKGDALFLSGSVRVQPEMVKVIERIASEVQRVNGDVLIVGHTDATPISRPGLPNNVALSEKRAAEVAQYFIAAGLPESKVKVRGVGSSQPVANEATAQGRAKNRRVEFFVTY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9802 - -


  Protein sequence: 452 a.a.    

>T6CP013170 CP038008:c2135253-2133898 [Citrobacter rodentium] [TssL]
MKDDLNLQLSAEPAEDEGSSPQALGRFLLDEQGEWIQEPEATSKEETGPVGEHTARGEHALKSESVQQRILRVKAAENPL
LEAAQPLLRALGDMPEQINDITHVEILKNTLKSQITLFGVVCDEVNIPWKKMAIVRYCLCTALDEAAHTTAWGLEAGWSQ
SNLLNHFEGDNDGGNKFFLLVGRLSMNPTEFADVLEVLLRILGLGFEGRYSIIEDGDRQLSKIRQRLLTLIQSTRNTTPP
ALSPHGLQPHGPAAREKLAIPVRLSALCAGVLVVSSFLWCKFWLLSRSDGITNDIYAMQNFSVPVVQPAMRLKLAVLLRN
EIRQQLLSVDENQKQSKVVLKGDALFLSGSVRVQPEMVKVIERIASEVQRVNGDVLIVGHTDATPISRPGLPNNVALSEK
RAAEVAQYFIAAGLPESKVKVRGVGSSQPVANEATAQGRAKNRRVEFFVTY*

  Nucleotide sequence: 1356 bp    

>T6CP013170 CP038008:c2135253-2133898 [Citrobacter rodentium] [TssL]
ATGAAAGACGATCTTAACCTGCAACTCTCCGCGGAACCGGCGGAGGATGAGGGGAGTTCGCCGCAGGCGTTGGGTAGGTT
CCTGCTGGATGAACAGGGGGAGTGGATACAGGAGCCGGAAGCGACGTCGAAAGAGGAAACCGGGCCTGTTGGCGAGCATA
CGGCGCGTGGTGAACACGCACTGAAAAGCGAAAGCGTGCAGCAGCGGATCTTACGCGTGAAGGCGGCGGAAAATCCGCTG
CTGGAAGCCGCGCAACCGCTACTGCGCGCGCTTGGCGATATGCCGGAGCAGATTAACGATATTACCCATGTCGAAATCCT
CAAAAACACCCTCAAAAGTCAGATCACGCTGTTCGGCGTTGTCTGTGACGAGGTGAATATTCCGTGGAAAAAGATGGCGA
TCGTGCGTTATTGCCTCTGTACCGCGCTTGATGAGGCGGCGCATACCACGGCATGGGGGCTTGAAGCGGGCTGGTCGCAG
AGTAACCTGCTGAACCACTTTGAAGGAGATAACGACGGAGGGAATAAATTCTTTCTGCTGGTTGGCCGTCTCTCCATGAA
TCCCACTGAATTCGCGGATGTGCTGGAGGTGTTGCTGCGCATTCTGGGGCTGGGGTTTGAAGGGCGTTACAGCATTATTG
AAGATGGCGACCGCCAGCTCAGCAAAATTCGCCAGCGTCTGTTGACCCTGATCCAAAGCACGCGAAACACCACGCCGCCC
GCGCTGTCGCCGCATGGGCTGCAACCGCATGGACCTGCGGCGCGCGAGAAGCTGGCGATCCCCGTGCGGCTAAGCGCGCT
GTGCGCTGGCGTACTGGTGGTGTCGTCGTTTCTCTGGTGCAAATTCTGGTTACTGTCGCGCAGTGACGGCATCACTAATG
ACATCTATGCCATGCAAAACTTCAGCGTGCCCGTGGTGCAACCTGCCATGCGTCTGAAGCTGGCGGTGCTGCTGCGTAAC
GAAATCAGGCAGCAGCTTCTCAGCGTGGATGAGAACCAGAAGCAGAGCAAAGTGGTGCTGAAAGGGGATGCGTTGTTCCT
GTCCGGCTCTGTCCGCGTTCAGCCGGAGATGGTGAAAGTTATTGAACGTATCGCCAGCGAAGTCCAACGCGTGAACGGCG
ACGTATTGATTGTCGGCCATACGGACGCCACCCCGATCAGTCGGCCAGGCCTGCCCAATAACGTTGCGCTGTCGGAAAAA
CGCGCGGCGGAAGTGGCGCAATATTTTATTGCGGCCGGGCTGCCGGAGAGCAAAGTGAAAGTCCGTGGCGTGGGGAGTAG
TCAACCCGTGGCGAACGAAGCGACGGCTCAGGGAAGGGCGAAGAATCGCCGTGTCGAGTTTTTTGTCACGTATTAA