Detailed information of component protein


Summary

Component ID T6CP013176
Component protein type TssH
T6SS ID (Type) T6SS01013 experimental (Type i3)
Strain Citrobacter rodentium DBS100
Replicon chromosome
Sequence Protein sequence (897 a.a.); Nucleotide sequence (2691 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) E2R62_10470
Coordinate (Strand) 2144634..2147324 (-)
NCBI ID 1609533873
GenBank CP038008
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.3e-38 619..785
AAA_lid_9 PF17871.3 1.9e-27 371..462
ClpB_D2-small PF10431.11 6e-14 791..865
AAA PF00004.31 7.4e-11 231..344
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-896 VAITRKNLFGKLNISLFKSVESATTLCKLRGNPYVELVHWLNQIYQQQDSDIRHIVRHFELDAEILERDFAQALTRLPAGASSISDFSYHIELAIERAWIFASLECQNTSIRSGHLLMALLTTMELRRALFSISSVFEKIPLEQLSKDLGYIIRDSAEESEAGGAMVSAEAGVPGEASNAMGGTQSGGLAQYSTDLTALAREGKIDPVLGRDKEINTMIDILLRRRQNNPLLTGEAGVGKTAVVEGLALALAAGEVPPALQKVRLLTLDVTALSAGASMKGEFEARLKAVLEDAAKSVDPVILFIDEVHTLVGAGGNAGTGDAANLMKPMLARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVEEPSEDLAIAMLRGLLPVLEKHHGVWVMDEAIRAAVRLSHRYIPARQLPDKAISLLDTACARVAVAQHAPPTELQLLKFHQQSAQAELSMLEKAIGFGKEDDKRLQPIQRAIDDHAEEATALERRWAQECELVATIIDTRQQLLAATVDDPQTPEAEKISYLQSRLNELEATLSEIRGEKALVQTEVNASIVAAIVADWTGIPVGQVLKDDVSAVMELPQRLAEKVIGQTYALTCLSQSIQTARAGLADPQKPFGVFMLVGPSGVGKTETALAIADQLYGGKQNLITINMSEYQEAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEVEKAHTDVHELFFQVFDKGSMEDGEGRQIDFRNTVILLTSNAGSDIISSACADPQTMPDEEGLLKLLQPALLKIFPAAFLGRVTVIPYLPLATDSLQHIVRIHLNRIAERAKAQYEMTLNFSDELVQHVVEQCPVAETGARMLIRFIEKNILPKIGSALLTQADKPAKNKTITMQCILSEEKEIDIEMQLEGKQNI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9754 - -


  Protein sequence: 897 a.a.    

>T6CP013176 CP038008:c2147324-2144634 [Citrobacter rodentium] [TssH]
VAITRKNLFGKLNISLFKSVESATTLCKLRGNPYVELVHWLNQIYQQQDSDIRHIVRHFELDAEILERDFAQALTRLPAG
ASSISDFSYHIELAIERAWIFASLECQNTSIRSGHLLMALLTTMELRRALFSISSVFEKIPLEQLSKDLGYIIRDSAEES
EAGGAMVSAEAGVPGEASNAMGGTQSGGLAQYSTDLTALAREGKIDPVLGRDKEINTMIDILLRRRQNNPLLTGEAGVGK
TAVVEGLALALAAGEVPPALQKVRLLTLDVTALSAGASMKGEFEARLKAVLEDAAKSVDPVILFIDEVHTLVGAGGNAGT
GDAANLMKPMLARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVEEPSEDLAIAMLRGLLPVLEKHHGVWVMDEAIRA
AVRLSHRYIPARQLPDKAISLLDTACARVAVAQHAPPTELQLLKFHQQSAQAELSMLEKAIGFGKEDDKRLQPIQRAIDD
HAEEATALERRWAQECELVATIIDTRQQLLAATVDDPQTPEAEKISYLQSRLNELEATLSEIRGEKALVQTEVNASIVAA
IVADWTGIPVGQVLKDDVSAVMELPQRLAEKVIGQTYALTCLSQSIQTARAGLADPQKPFGVFMLVGPSGVGKTETALAI
ADQLYGGKQNLITINMSEYQEAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEVEKAHTDVHELFFQVFDKGS
MEDGEGRQIDFRNTVILLTSNAGSDIISSACADPQTMPDEEGLLKLLQPALLKIFPAAFLGRVTVIPYLPLATDSLQHIV
RIHLNRIAERAKAQYEMTLNFSDELVQHVVEQCPVAETGARMLIRFIEKNILPKIGSALLTQADKPAKNKTITMQCILSE
EKEIDIEMQLEGKQNI*

  Nucleotide sequence: 2691 bp    

>T6CP013176 CP038008:c2147324-2144634 [Citrobacter rodentium] [TssH]
GTGGCGATTACCAGAAAAAATCTATTCGGAAAACTTAATATAAGCCTGTTTAAAAGCGTGGAGAGTGCCACTACGCTGTG
TAAATTACGCGGTAATCCTTACGTTGAATTGGTTCACTGGTTAAATCAGATTTATCAGCAGCAGGATAGCGATATCCGCC
ATATTGTACGGCATTTTGAACTTGATGCAGAAATTCTCGAACGTGATTTTGCTCAGGCATTAACGCGCCTGCCGGCGGGC
GCCAGTTCTATTTCCGATTTTTCATATCATATTGAACTGGCTATCGAGCGGGCATGGATATTTGCCAGCCTGGAGTGTCA
GAACACGAGTATTCGTAGCGGTCATTTGTTGATGGCGCTGCTGACCACCATGGAATTACGTCGCGCGCTATTCAGCATTT
CGTCTGTATTCGAAAAAATTCCGCTGGAACAGTTAAGCAAAGATCTTGGCTACATTATTCGCGACTCTGCGGAAGAGAGC
GAAGCGGGCGGCGCAATGGTTTCCGCCGAAGCGGGCGTACCGGGCGAAGCCAGTAACGCGATGGGGGGCACGCAGAGCGG
CGGACTGGCGCAATATTCAACCGATCTGACCGCGCTGGCGCGTGAAGGCAAAATTGATCCGGTGCTGGGGCGGGATAAAG
AGATCAATACCATGATCGATATTCTGTTGCGTCGTCGACAGAATAACCCGCTGCTCACCGGGGAAGCGGGGGTCGGGAAA
ACGGCGGTCGTGGAAGGTCTGGCGCTGGCGTTAGCTGCCGGAGAAGTACCGCCCGCGCTGCAAAAAGTTCGCCTGCTGAC
GCTGGATGTCACCGCGCTTTCCGCCGGAGCCAGCATGAAAGGTGAATTTGAAGCGCGTTTAAAAGCGGTGCTGGAAGACG
CCGCCAAATCAGTCGATCCGGTGATTTTGTTTATTGATGAGGTGCATACGCTGGTCGGCGCGGGCGGCAATGCCGGCACC
GGGGATGCCGCTAATCTGATGAAACCGATGCTGGCTCGCGGGCAGCTGCGCACCATCGGTGCGACAACCTGGAGCGAATT
TAAGCGCCACATCGAAAAAGATCCGGCGCTGACGCGACGTTTCCAGGTGCTGCAGGTCGAGGAGCCGTCGGAAGATCTGG
CTATCGCTATGCTGCGCGGCCTGCTGCCGGTACTGGAAAAACACCACGGCGTCTGGGTCATGGATGAGGCGATCCGCGCC
GCCGTCCGTTTATCTCATCGCTATATTCCGGCCCGGCAGTTGCCCGATAAAGCGATCAGCCTGCTGGATACGGCCTGCGC
CAGGGTCGCCGTCGCGCAGCACGCGCCGCCAACCGAGCTACAGCTGCTGAAATTCCATCAGCAGTCGGCGCAGGCTGAAC
TGTCCATGCTGGAAAAAGCGATTGGCTTTGGCAAAGAGGACGATAAACGCCTTCAGCCGATTCAGCGCGCTATCGACGAC
CATGCAGAAGAAGCGACGGCGCTGGAGCGGCGCTGGGCGCAGGAGTGCGAACTGGTGGCGACGATTATTGATACCCGCCA
GCAGTTGCTTGCCGCCACGGTGGACGATCCGCAAACGCCGGAAGCGGAAAAAATCAGTTACCTGCAGTCTCGTTTGAATG
AGCTGGAAGCGACGCTGAGCGAGATCCGCGGCGAAAAGGCGCTGGTGCAGACGGAAGTGAACGCCAGCATCGTGGCGGCG
ATCGTGGCGGACTGGACGGGTATCCCGGTGGGTCAGGTGCTGAAAGACGACGTCAGCGCCGTCATGGAACTACCGCAACG
TCTGGCGGAAAAAGTCATTGGCCAGACGTATGCGTTAACCTGCCTGAGCCAGAGTATTCAGACCGCGCGCGCCGGGCTTG
CCGATCCGCAAAAACCTTTTGGCGTGTTCATGCTGGTTGGCCCTTCCGGGGTCGGGAAAACCGAAACCGCGCTGGCGATT
GCCGACCAGCTTTATGGCGGCAAGCAGAATCTGATCACTATTAATATGAGTGAATATCAGGAAGCGCATACGGTTTCTTC
GCTGAAAGGATCGCCGCCGGGTTATGTGGGATATGGCGAAGGCGGCGTATTAACCGAAGCGGTACGCCGCAAGCCTTATA
GCGTCATTTTACTGGATGAAGTGGAAAAAGCGCACACCGATGTGCATGAACTGTTTTTCCAGGTATTTGATAAAGGTTCG
ATGGAAGACGGTGAAGGGCGGCAGATCGATTTTCGCAATACCGTCATTTTGCTGACCAGTAACGCCGGTAGCGACATTAT
TAGCAGCGCCTGCGCCGATCCGCAAACCATGCCTGATGAAGAAGGCTTGCTGAAATTACTACAGCCAGCATTGCTGAAGA
TATTTCCGGCCGCGTTTTTAGGTCGCGTCACCGTTATACCTTATTTACCGTTGGCGACGGATTCGCTGCAGCATATTGTC
AGAATTCATTTGAACCGTATCGCTGAGCGTGCGAAAGCGCAGTATGAGATGACGCTTAACTTCAGCGATGAATTGGTCCA
GCACGTTGTTGAACAGTGTCCGGTAGCGGAAACCGGCGCCAGGATGCTAATCCGCTTTATTGAGAAAAATATTTTACCAA
AGATAGGCAGTGCACTTTTAACCCAGGCTGACAAACCGGCAAAAAATAAAACAATAACCATGCAGTGCATTTTATCTGAA
GAAAAGGAAATTGATATTGAGATGCAACTGGAGGGAAAACAAAACATTTAA