Detailed information of component protein


Summary

Component ID T6CP013177
Component protein type TssF
T6SS ID (Type) T6SS01013 experimental (Type i3)
Strain Citrobacter rodentium DBS100
Replicon chromosome
Sequence Protein sequence (627 a.a.); Nucleotide sequence (1881 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) E2R62_10475
Coordinate (Strand) 2147627..2149507 (+)
NCBI ID 1609533874
GenBank CP038008
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.4e-210 3..623
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-626 VEHNFLDYYNQELTFVREMAREFAEQHPKIAGRLGMQGIETADPYVERLIEAFCFLSARTQIKLDAEFPKFTQRLLDIIYPNYNAPTPSMGVVQLQPNLKEGDLTHGYVIPKKSTFYSRLLPGEMTRCEFRNNQDVRLWPLDIAEVRLTSVPPDIPDLELHRLNHQQLKGALRIKLRLQGDLVFSDLNGLDELPIYIQGDERVVSHTFELLHGRHVAVVVRSGEGENIHHHVIVNDALKFEGLAPDQSLLPLQWNMFHGHTLIQEYIACRERFYFFSIAQLAAALEENNTNAVEIIILLNKLPQDLVPHLDASRFLLHCTAVINLFPKRVDRIEVNRALNNFHIVPDRSRPMDYEVFSVDKVFGLQAETSEELTFNPLYQTRHSDTGNFGRYFSIRREVRVKEASHRKYDTRTPYSGTEIFISLVDQQEAPYSEHIRYLLVDAMVTNRDLPRLLTSTGNLELTMSDSVPIHGARFVSSPSAPRSPFAVGEAAWRLIRQLSFNYLPLSGMEHARGGESLRNMLRLFTSSADTETLTQINSLVGCKTEPVVRRLSEEGLLVYGRGVRCSLTVDEEGFSGISPYLFGLVMENYLARHAAINIFTETELHSMQRGLIARWNARPGRRGAL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 627 a.a.    

>T6CP013177 CP038008:2147627-2149507 [Citrobacter rodentium] [TssF]
VEHNFLDYYNQELTFVREMAREFAEQHPKIAGRLGMQGIETADPYVERLIEAFCFLSARTQIKLDAEFPKFTQRLLDIIY
PNYNAPTPSMGVVQLQPNLKEGDLTHGYVIPKKSTFYSRLLPGEMTRCEFRNNQDVRLWPLDIAEVRLTSVPPDIPDLEL
HRLNHQQLKGALRIKLRLQGDLVFSDLNGLDELPIYIQGDERVVSHTFELLHGRHVAVVVRSGEGENIHHHVIVNDALKF
EGLAPDQSLLPLQWNMFHGHTLIQEYIACRERFYFFSIAQLAAALEENNTNAVEIIILLNKLPQDLVPHLDASRFLLHCT
AVINLFPKRVDRIEVNRALNNFHIVPDRSRPMDYEVFSVDKVFGLQAETSEELTFNPLYQTRHSDTGNFGRYFSIRREVR
VKEASHRKYDTRTPYSGTEIFISLVDQQEAPYSEHIRYLLVDAMVTNRDLPRLLTSTGNLELTMSDSVPIHGARFVSSPS
APRSPFAVGEAAWRLIRQLSFNYLPLSGMEHARGGESLRNMLRLFTSSADTETLTQINSLVGCKTEPVVRRLSEEGLLVY
GRGVRCSLTVDEEGFSGISPYLFGLVMENYLARHAAINIFTETELHSMQRGLIARWNARPGRRGAL*

  Nucleotide sequence: 1881 bp    

>T6CP013177 CP038008:2147627-2149507 [Citrobacter rodentium] [TssF]
GTGGAACACAACTTTCTAGATTATTATAACCAGGAACTGACGTTTGTCAGAGAAATGGCGCGAGAATTTGCTGAGCAGCA
CCCGAAGATTGCCGGGCGACTAGGGATGCAGGGGATAGAAACTGCCGATCCTTACGTAGAGCGTTTGATCGAGGCATTTT
GCTTTTTATCTGCCCGAACGCAGATAAAACTCGATGCAGAATTTCCTAAATTCACCCAACGATTGCTGGATATTATCTAC
CCGAATTACAATGCGCCGACGCCGTCAATGGGGGTTGTTCAACTACAGCCGAATCTGAAAGAAGGCGATTTAACGCACGG
CTACGTCATCCCCAAAAAAAGCACTTTTTACAGTCGGTTACTGCCAGGCGAAATGACGCGTTGCGAATTCAGGAATAATC
AGGACGTCAGGCTGTGGCCGCTGGATATTGCAGAGGTGCGTTTAACCTCTGTCCCTCCGGATATTCCAGACCTGGAACTC
CATCGCCTTAACCACCAGCAGTTAAAAGGCGCGCTGCGCATCAAGCTGCGTTTACAGGGTGATTTAGTATTCTCAGATTT
GAACGGACTGGATGAGCTACCCATTTATATTCAGGGTGATGAACGCGTAGTATCGCATACCTTTGAATTGCTTCACGGCA
GGCATGTCGCGGTGGTGGTTCGTAGCGGAGAGGGTGAAAATATTCACCATCACGTTATTGTCAACGACGCGTTAAAATTT
GAAGGGCTGGCGCCAGATCAGAGCCTGTTGCCCTTGCAATGGAATATGTTCCACGGGCACACCCTGATACAGGAATATAT
CGCCTGCCGCGAGCGATTTTATTTTTTCTCGATCGCCCAGCTGGCAGCCGCGCTGGAAGAGAATAATACCAATGCAGTAG
AAATTATTATTCTGTTAAACAAATTACCGCAGGATCTGGTGCCGCATCTGGACGCCTCGCGATTTTTACTGCACTGCACT
GCGGTGATTAACCTCTTTCCCAAACGCGTGGACCGAATTGAAGTTAACCGCGCGCTGAATAATTTTCATATCGTGCCGGA
CCGCAGCCGCCCCATGGACTATGAAGTCTTTTCCGTCGATAAAGTCTTCGGCTTACAGGCGGAAACCAGCGAAGAGCTAA
CCTTTAATCCGCTCTACCAGACCCGACACAGCGACACCGGTAATTTTGGCCGTTATTTCTCCATCAGACGGGAAGTCAGG
GTGAAAGAGGCGAGCCACCGTAAATATGACACCCGCACGCCTTACAGCGGCACGGAGATTTTTATTTCGCTGGTTGATCA
ACAGGAAGCGCCCTATAGCGAACATATTCGTTACCTGCTGGTTGACGCTATGGTAACCAACCGCGACCTGCCCCGCTTGC
TGACCAGTACCGGCAACCTTGAGTTGACCATGTCAGACTCCGTTCCGATTCACGGCGCCCGCTTCGTCAGCTCGCCAAGC
GCCCCGCGTTCGCCATTCGCCGTTGGCGAGGCGGCATGGCGGCTTATCCGTCAGCTTAGCTTTAACTATCTGCCTCTCTC
CGGGATGGAACACGCCCGGGGCGGCGAATCGCTGCGTAATATGCTGCGCCTGTTCACCAGCTCTGCCGATACGGAAACCC
TGACGCAAATTAACAGCCTAGTGGGGTGTAAAACCGAGCCCGTGGTGCGTCGCCTGTCAGAGGAGGGACTGCTGGTTTAC
GGGCGCGGCGTGCGTTGTAGTTTAACCGTCGATGAAGAGGGTTTCTCCGGCATCAGTCCGTATCTTTTTGGCCTGGTGAT
GGAAAATTACCTGGCGCGGCACGCGGCGATCAACATCTTTACCGAAACTGAACTGCACTCCATGCAGCGCGGCTTAATCG
CACGCTGGAACGCGCGTCCCGGCAGACGAGGCGCATTATGA