Detailed information of component protein


Summary

Component ID T6CP013174
Component protein type TssC
T6SS ID (Type) T6SS01013 experimental (Type i3)
Strain Citrobacter rodentium DBS100
Replicon chromosome
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) E2R62_10440
Coordinate (Strand) 2137866..2139365 (-)
NCBI ID 1609533867
GenBank CP038008
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.6e-136 68..371
VipB_2 PF18945.2 2.1e-45 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MATQAQNHKQAAPQATTQNDFNALLTREFKPKSEQAKSAVEMAVKTLAEQALSTSITMADDAYKNIAAIIAEIDLKLSEQINLILHHEEFQRLESAWRGLHYLVNNTETDEKLKLRFMDISKDDLRRNMKRYKGIAWDQSPLFKQIYEEEYGQLGGEPYGCLVADYHFDHSAPDVDLLSSIGKVAASAHMPFITGASPSVMQMDSWQELANPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLARLPYGINTNPVDNFNFEEDTDGANHSKYVWANAAYAMAVNINRSFKHYGWCTMIRGVESGGVVEDLPCHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKEREDMQRWLNNWVMNYVDGDPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9830 - -


  Protein sequence: 500 a.a.    

>T6CP013174 CP038008:c2139365-2137866 [Citrobacter rodentium] [TssC]
MATQAQNHKQAAPQATTQNDFNALLTREFKPKSEQAKSAVEMAVKTLAEQALSTSITMADDAYKNIAAIIAEIDLKLSEQ
INLILHHEEFQRLESAWRGLHYLVNNTETDEKLKLRFMDISKDDLRRNMKRYKGIAWDQSPLFKQIYEEEYGQLGGEPYG
CLVADYHFDHSAPDVDLLSSIGKVAASAHMPFITGASPSVMQMDSWQELANPRDLTKIFTQNLEYAAWNSLRQSEDSRYI
GLAMPRFLARLPYGINTNPVDNFNFEEDTDGANHSKYVWANAAYAMAVNINRSFKHYGWCTMIRGVESGGVVEDLPCHTF
PTDDGGVDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDPDATANANLSARLPYLFACSRF
AHYLKCIVRDKIGSFKEREDMQRWLNNWVMNYVDGDPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLE
GLTVSLRMVAKLPSLKDVA*

  Nucleotide sequence: 1500 bp    

>T6CP013174 CP038008:c2139365-2137866 [Citrobacter rodentium] [TssC]
ATGGCAACTCAAGCACAAAACCATAAGCAGGCCGCGCCGCAGGCCACCACGCAAAATGATTTTAATGCGTTACTGACCCG
TGAATTTAAGCCGAAATCCGAGCAGGCGAAATCGGCGGTCGAAATGGCGGTGAAAACCCTGGCGGAACAGGCGCTCTCTA
CCTCGATCACTATGGCTGACGATGCTTATAAAAACATCGCGGCGATTATCGCGGAGATTGACCTTAAGCTGTCAGAGCAA
ATTAACCTGATTCTTCATCATGAAGAGTTCCAGCGTCTGGAAAGCGCCTGGCGCGGCCTGCACTACCTGGTGAACAACAC
CGAAACCGATGAGAAGCTGAAGCTGCGCTTTATGGACATTTCCAAGGATGACCTGCGTCGCAACATGAAGCGCTACAAAG
GGATCGCATGGGATCAAAGCCCGCTATTTAAGCAGATTTACGAAGAAGAGTACGGTCAGCTTGGCGGCGAACCTTACGGC
TGCCTGGTGGCGGATTACCATTTCGATCACAGCGCGCCGGATGTGGATCTGCTCTCCTCGATTGGCAAGGTGGCGGCGTC
CGCCCATATGCCGTTTATTACCGGCGCGTCGCCATCCGTTATGCAGATGGACTCCTGGCAGGAGCTGGCTAACCCGCGTG
ATCTGACGAAAATCTTTACCCAGAACCTGGAATATGCCGCGTGGAACTCCCTGCGTCAGTCTGAGGACTCTCGTTATATC
GGTCTGGCGATGCCGCGCTTCCTTGCGCGTCTGCCTTACGGCATCAACACTAACCCGGTAGATAACTTTAATTTTGAAGA
AGATACCGACGGCGCGAATCACAGCAAATACGTCTGGGCTAACGCTGCGTATGCGATGGCGGTCAACATCAACCGTTCCT
TCAAGCATTACGGCTGGTGCACCATGATTCGCGGCGTAGAGAGCGGCGGCGTGGTGGAAGATCTGCCTTGTCATACCTTC
CCGACCGACGATGGCGGCGTGGATATGAAATGCCCGACGGAAATCGCAATTTCCGATCGTCGCGAGGCGGAGCTGGCGAA
GAATGGCTTTATTCCCCTGGTTCACCGTAAAAATACCGATTACGCGGCGTTTATTGGCGCGCAGTCATTGCAGAAACCAG
CGGAATATTACGATCCGGACGCCACGGCCAACGCCAATCTTTCCGCGCGTCTTCCGTACCTGTTTGCCTGTTCACGTTTC
GCACATTATCTGAAGTGCATCGTGCGCGACAAAATCGGTTCGTTCAAAGAGCGTGAAGATATGCAGCGCTGGCTGAACAA
TTGGGTCATGAATTATGTCGATGGCGACCCGGCGAACTCATCGCAGGAAACCAAAGCGCGCCGTCCGCTGGCGGCGGCGG
AAGTGGTGGTGGAAGACGTGGAAGGCAATCCGGGTTATTACCAGGCGAAATTCTTCCTGCGTCCTCATTTCCAACTGGAA
GGTCTGACCGTTTCTTTACGCATGGTCGCTAAATTACCGTCGCTGAAAGACGTGGCGTAA