Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00897  |
| T6SS type | Type i5 |
| Strain | Rhizobium leguminosarum bv. trifolii |
| Replicon (GenBank) | chromosome (AF361470) |
| Location | 744..17137 |
| Function | anti-eukaryotic; effector translocation |
| Comment | Host-specific inhibition of infection of pea plants. |
| References | [1] Bladergroen MR et al (2003) Infection-Blocking Genes of a Symbiotic Rhizobium leguminosarum Strain That Are Involved in Temperature-Dependent Protein Secretion. Mol Plant Microbe Interact. 16(1):53-64. [PudMed:12580282] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TagJ | TssA | TssB | TssC | TssE | TssF | TssG | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP010887 | TssA | Locus_01 (impA) | 744..1820 | + | 1077 | 16326486 | ImpA |
| T6CP010888 | TssB | Locus_02 (impB) | 1857..2402 | + | 546 | 16326475 | ImpB |
| T6CP010889 | TssC | Locus_03 (impC) | 2533..4014 | + | 1482 | 16326479 | ImpC |
| T6CP010890 | TssC | Locus_04 (impD) | 4081..5469 | + | 1389 | 16326480 | ImpD |
| T6CP012909 | TagJ | Locus_05 (impE) | 5466..6296 | + | 831 | 16326481 | ImpE |
| T6CP010891 | TssE | Locus_06 (impF) | 6289..6798 | + | 510 | 16326482 | ImpF |
| T6CP010892 | TssF | Locus_07 (impG) | 6791..8572 | + | 1782 | 16326483 | ImpG |
| T6CP010893 | TssG | Locus_08 (impH) | 8593..9594 | + | 1002 | 16326484 | ImpH |
| T6CP012396 | FHA | Locus_09 (impI) | 9606..10805 | + | 1200 | 16326459 | ImpI |
| T6CP010894 | TssK | Locus_10 (impJ) | 10795..12135 | + | 1341 | 16326460 | ImpJ |
| T6CP010895 | TssL | Locus_11 (impK) | 12132..13664 | + | 1533 | 16326461 | ImpK |
| T6CP010896 | TssM | Locus_12 (impL) | 13661..17137 | + | 3477 | 16326462 | ImpL |
| Locus_13 (impM) | 17148..18521 | + | 1374 | 16326463 | ImpM | ||
| Locus_14 (impN) | 18511..19425 | + | 915 | 16326464 | ImpN | ||
| Locus_15 | 19422..20561 | - | 1140 | 16326485 | putative capsular polysaccharide exporter outer membrane protein | ||
| Locus_16 | 20824..21171 | + | 348 | 16326465 | hypothetical protein | ||
| Locus_17 | 21192..21854 | + | 663 | 16326466 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|