Detailed information of component protein


Summary

Component ID T6CP010890
Component protein type TssC
T6SS ID (Type) T6SS00897 experimental (Type i5)
Strain Rhizobium leguminosarum bv. trifolii
Replicon chromosome
Sequence Protein sequence (463 a.a.); Nucleotide sequence (1389 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 4081..5469 (+)
NCBI ID 16326480
GenBank AF361470
Uniprot ID Q93ED0_RHILT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.5e-101 12..323
VipB_2 PF18945.2 9.2e-38 333..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-462 MGSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLGVTWSELTRTMERASDFDQSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGDPVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVNDFSWLANETARIRWNGLRAREDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNFIDSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCELGIIPAATTYLSSSAIFNSNQSLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLADAISIERKLADWLTAYTLGNDDADIALRTRFPLRSAGIGVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 463 a.a.    

>T6CP010890 AF361470:4081-5469 [Rhizobium leguminosarum bv. trifolii] [TssC]
MGSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLGVTWSELTRTMERASDF
DQSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGDPVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVN
DFSWLANETARIRWNGLRAREDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNF
IDSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCELGIIPAATTYLSSSAIFNSNQ
SLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLADAISIERKLADWLTAYTLGNDDADIALRTRFP
LRSAGIGVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA*

  Nucleotide sequence: 1389 bp    

>T6CP010890 AF361470:4081-5469 [Rhizobium leguminosarum bv. trifolii] [TssC]
ATGGGTTCCAGCACTGAATGGCGGCGCCGGGCGGATCAGCTGATTACGCTGATCGACGAAGCGCTGAACAAGCAAGTCAA
TGCCATCCTCCACCATCCCGATTTTCAGGCGATGGAGGCGAGATGGCGTGGCCTCGCCATGCTCGTGCGCGAGGCAAGCC
GCAGCGGCGAAGTGAAAGTCAAGCTTCTCGGCGTCACGTGGAGCGAGCTCACGCGGACGATGGAGCGTGCCAGCGACTTC
GACCAAAGCCACCTCTTCGAACTGATCTATAGCCGCGAGTTCGGCATGCCGGGCGGCGAACCCCTCGGTCTGCTGGTCGG
CGATTATTATCTTTCTCCGGCCGATCCGGCCGGCGGCGATCCGGTCAGCACGCTGTCGCAGATCGGCATGGTGGCGGCCG
CCGCATTCTGCCCCTTCGTCGCGGGTGCTGCGCCGCTGGCGATCGGGCTTGAAGACTTTCACGAGCTGAACCGGGTCAAC
GACTTTTCCTGGCTTGCCAATGAGACCGCCCGCATCCGCTGGAATGGTCTCCGCGCACGTGAGGATTCGCGTTTCCTCGG
ACTTGTCGCGCCGCGCATCCTGATGCGTTCGCCGCTCACGCCTCATTCGCGCAATCGCAACGACGGCTTTCCCTTCCGCG
AAAGCATTGCTGGCGACGGTAGTTCGCTTCTCTGGGGCAACGCCGCTTTCGCCTTTGCGACCGTCGTCATTCGCAATTTC
ATCGATTCCGGCTGGTTCGCGGATATCCGCGGCGTCACGCAGGATGCCGTCGACGGTGGCCTGCTGAGTACAGCGGAATT
GCCGCCTTATGACTTCGGCACAGAAAGCAACGGACTATCAGCGCAGGCGCCGGTGGAGATCCATCTGACCAGCGGCCAGG
AGCAGCAGCTCTGCGAGCTCGGCATCATCCCTGCCGCGACCACCTATCTCTCCTCTTCGGCGATTTTCAATTCCAACCAG
TCGCTGCACGCGCCGCCGCACTATTCCAACGAACATGCGCGCCAGAACGCCCGCCTCGCAGCCATGCTGCAATATGTGCT
CTGCGCGTCGCGCTTCTCGCATTATCTCAAGGTCATCATGCGCGACGAAATCGGCCAGCTTGCGGATGCGATCTCGATCG
AGCGGAAGCTGGCGGACTGGCTGACCGCCTATACGCTCGGCAACGACGATGCCGACATCGCGCTACGCACACGCTTCCCC
CTGCGCTCGGCCGGCATCGGCGTCGCCGAGATTCCGGGCAAGCCCGGCAGCTTCTCCTGCACCGTCCGGCTGCAGCCGCA
TTTCCAGCTCGACGACGTTGCCACGAGTTTCCATCTCATTGCCGAGACCGCGACCACGGGCCAGATTTTGAGCCGCCCCG
TTGCCATACCCGAGAGGATGTCCGCATGA