Detailed information of component protein


Summary

Component ID T6CP010892
Component protein type TssF
T6SS ID (Type) T6SS00897 experimental (Type i5)
Strain Rhizobium leguminosarum bv. trifolii
Replicon chromosome
Sequence Protein sequence (594 a.a.); Nucleotide sequence (1782 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 6791..8572 (+)
NCBI ID 16326483
GenBank AF361470
Uniprot ID Q93EC7_RHILT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4e-198 1..590
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-593 MAEGFLHRYNEELLALRRRAARFADAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEFPELTDGLLETLYPHYLAPLPSMSIVKFRPADTLASVQTVPRHTEVLAEPVRGEACRFRTTQDVEIAPIEITGANLSGQPINAPLSPYTGVAGCLRLSIRSLDARKPLGGLGMSRLRLHIPSPWQQAVAIYELLANHTLGIALAKHADDRSPVFLPAGNLKPVGFEPEEAMLPYPAPSFIGYRLLTEFFALPRKFLFLDIEGFDAWRGETLELFVYLGESDAKLERAVSVRDFALNATPVVNLFRQVCEPIAIDGTRTEYRLLPDARRQKTREIYSIDRVLLTGSRGQEEFCQPFFGRSQRAGTSATYWQAYRRFDEDDRTSDMDIAFVNRQRRSSGPVDAVASVDTLCLNRDLPEQLPFGGGHPFLQLASGHEAIASVEALIPPTPSVRMNDQEGRNWRLMSHLILNHLSLFDNDGAALKDILSLYAFRDSPETKQFVDALVRIKAGTSTARLGSGGTVPGTEIALEFDPAAIDRPSAFLFGSVLDRFFSLYASVNSFTRLTIRMKGQSRPIARWPARAAERPLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9867 - -


  Protein sequence: 594 a.a.    

>T6CP010892 AF361470:6791-8572 [Rhizobium leguminosarum bv. trifolii] [TssF]
MAEGFLHRYNEELLALRRRAARFADAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARVRQKLDDEFPELTDGLLETLY
PHYLAPLPSMSIVKFRPADTLASVQTVPRHTEVLAEPVRGEACRFRTTQDVEIAPIEITGANLSGQPINAPLSPYTGVAG
CLRLSIRSLDARKPLGGLGMSRLRLHIPSPWQQAVAIYELLANHTLGIALAKHADDRSPVFLPAGNLKPVGFEPEEAMLP
YPAPSFIGYRLLTEFFALPRKFLFLDIEGFDAWRGETLELFVYLGESDAKLERAVSVRDFALNATPVVNLFRQVCEPIAI
DGTRTEYRLLPDARRQKTREIYSIDRVLLTGSRGQEEFCQPFFGRSQRAGTSATYWQAYRRFDEDDRTSDMDIAFVNRQR
RSSGPVDAVASVDTLCLNRDLPEQLPFGGGHPFLQLASGHEAIASVEALIPPTPSVRMNDQEGRNWRLMSHLILNHLSLF
DNDGAALKDILSLYAFRDSPETKQFVDALVRIKAGTSTARLGSGGTVPGTEIALEFDPAAIDRPSAFLFGSVLDRFFSLY
ASVNSFTRLTIRMKGQSRPIARWPARAAERPLL*

  Nucleotide sequence: 1782 bp    

>T6CP010892 AF361470:6791-8572 [Rhizobium leguminosarum bv. trifolii] [TssF]
ATGGCTGAAGGTTTCCTGCACCGTTACAATGAGGAATTGCTGGCGCTTCGCCGCCGGGCCGCGCGCTTTGCCGATGCCTT
CCCGAAGATCGCCGGCCGCCTGCGCATGACCGGCGACGTCGCCGACGACCCGCATGTGGAACGCCTGATCCAGAGTTTCG
CCTATTCGGCCGCCCGCGTCCGCCAGAAGCTGGACGACGAATTTCCCGAGCTGACCGACGGCCTTCTCGAAACGCTTTAT
CCCCATTATCTGGCGCCACTGCCCTCGATGAGCATCGTCAAGTTCCGCCCAGCCGACACGCTCGCCTCGGTCCAGACCGT
GCCACGCCATACGGAAGTCCTGGCCGAGCCGGTGAGAGGGGAAGCTTGCCGCTTCCGTACCACGCAGGATGTCGAGATCG
CGCCGATCGAAATCACCGGTGCTAATCTCTCCGGCCAGCCGATCAATGCGCCACTTTCGCCCTATACCGGCGTTGCCGGT
TGCCTCAGGCTGTCCATCCGCAGCCTCGATGCCCGAAAGCCGCTCGGCGGCCTTGGCATGAGCCGGCTGCGCCTGCACAT
TCCGTCCCCCTGGCAGCAGGCAGTGGCGATCTACGAACTGCTTGCCAATCATACACTCGGCATCGCACTTGCCAAACATG
CGGACGACCGTTCGCCGGTCTTCCTGCCGGCGGGCAATCTCAAACCGGTCGGCTTCGAACCAGAAGAGGCCATGCTGCCC
TATCCGGCGCCGAGCTTCATCGGCTACCGGCTGCTAACCGAATTTTTCGCTCTGCCGCGCAAATTTCTGTTTCTCGACAT
CGAAGGGTTCGATGCGTGGCGGGGGGAGACGCTGGAGCTCTTCGTCTACCTCGGGGAAAGCGACGCCAAGCTCGAACGCG
CAGTCTCGGTCCGCGACTTCGCGCTCAATGCAACGCCCGTCGTCAACCTCTTCCGCCAGGTTTGCGAGCCGATCGCCATC
GACGGCACCCGCACGGAATACCGCCTCCTGCCGGATGCGCGCCGCCAAAAGACCCGCGAGATCTATTCCATCGACCGCGT
TCTCCTGACCGGATCGCGCGGCCAGGAGGAATTCTGCCAGCCGTTCTTCGGACGGTCGCAACGGGCTGGCACGAGCGCAA
CCTACTGGCAGGCCTATCGCCGTTTCGACGAAGACGACAGGACCAGCGACATGGACATCGCCTTCGTCAACAGGCAGCGC
CGTTCTTCAGGTCCTGTCGATGCGGTCGCAAGCGTCGATACGCTCTGCCTCAACCGCGACCTGCCGGAACAGCTTCCCTT
CGGCGGCGGCCATCCATTCCTGCAGCTCGCTTCCGGCCATGAGGCGATCGCCAGCGTCGAAGCCCTGATCCCGCCGACGC
CGTCGGTCAGGATGAACGATCAGGAAGGGCGGAACTGGCGGCTGATGTCGCATCTCATCCTCAATCACCTGTCGCTCTTC
GACAATGACGGTGCGGCACTCAAGGATATCCTGTCGCTCTACGCCTTCCGGGATAGCCCCGAGACCAAGCAATTCGTCGA
TGCGCTCGTCAGGATCAAGGCGGGCACTTCGACCGCCCGCCTCGGCAGCGGCGGCACGGTGCCCGGCACCGAGATCGCGC
TTGAATTCGATCCGGCCGCCATCGACCGGCCCTCGGCCTTCCTGTTCGGCAGCGTGCTCGACCGCTTCTTCAGTCTCTAC
GCCTCGGTCAACAGCTTCACCCGGCTCACCATTCGGATGAAGGGGCAATCGAGGCCGATCGCCCGGTGGCCGGCACGCGC
CGCCGAACGCCCGCTTCTCTAA