Detailed information of component protein


Summary

Component ID T6CP010894
Component protein type TssK
T6SS ID (Type) T6SS00897 experimental (Type i5)
Strain Rhizobium leguminosarum bv. trifolii
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 10795..12135 (+)
NCBI ID 16326460
GenBank AF361470
Uniprot ID Q93EC4_RHILT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6.1e-151 19..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MRNENRVAWSEGMFLRVQHFQQADRWTERLVRTATHGLSPYPWGVAEIGIDRGALAIGQFALSNLRGVLPDGTPFEAPVDTDLPPPLDLDENTKNAVVYLALPARQPGKADVALNGGAARNSVRLVASPYEAPDANVETDFMAPIDVGRLSLRYLRTGDELAGYELIGLARIIEVRSDRAVILDPDYIVPSLNCTAAARLGELITELLGIVRHRAEAIAERIGDPTIRGTAEVGDYLLLQMLNRADPMLKHISANATRIHPIVFYETCIQLAGELATFTTDRKRASDFPPYRHDDLKATFAAVFDDLRASLSSVLEQAAVAIELAERRHGVRIGTINDRSLLRDAGFVLAVRAEMPAEDVRRKLPAQIKIGPVERIADLVNVALPGIPVRPLPVLPRQLPYRSGTIYFELDTKNPLWKQLDTSGAIAVHLAGDFPGLEIELWALRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9747 - -


  Protein sequence: 447 a.a.    

>T6CP010894 AF361470:10795-12135 [Rhizobium leguminosarum bv. trifolii] [TssK]
MRNENRVAWSEGMFLRVQHFQQADRWTERLVRTATHGLSPYPWGVAEIGIDRGALAIGQFALSNLRGVLPDGTPFEAPVD
TDLPPPLDLDENTKNAVVYLALPARQPGKADVALNGGAARNSVRLVASPYEAPDANVETDFMAPIDVGRLSLRYLRTGDE
LAGYELIGLARIIEVRSDRAVILDPDYIVPSLNCTAAARLGELITELLGIVRHRAEAIAERIGDPTIRGTAEVGDYLLLQ
MLNRADPMLKHISANATRIHPIVFYETCIQLAGELATFTTDRKRASDFPPYRHDDLKATFAAVFDDLRASLSSVLEQAAV
AIELAERRHGVRIGTINDRSLLRDAGFVLAVRAEMPAEDVRRKLPAQIKIGPVERIADLVNVALPGIPVRPLPVLPRQLP
YRSGTIYFELDTKNPLWKQLDTSGAIAVHLAGDFPGLEIELWALRE*

  Nucleotide sequence: 1341 bp    

>T6CP010894 AF361470:10795-12135 [Rhizobium leguminosarum bv. trifolii] [TssK]
ATGAGGAATGAAAACCGGGTGGCCTGGAGCGAAGGCATGTTCCTTCGCGTGCAGCATTTTCAGCAGGCGGACCGCTGGAC
CGAGCGGCTCGTGCGCACGGCGACGCACGGCCTGTCGCCCTATCCCTGGGGAGTGGCGGAAATCGGCATCGACCGCGGCG
CACTGGCGATCGGCCAATTCGCGCTGTCGAACCTGCGCGGCGTATTGCCGGACGGAACGCCGTTCGAAGCCCCTGTTGAT
ACCGACCTGCCGCCGCCGCTCGATCTCGACGAGAACACCAAGAATGCGGTCGTCTATCTCGCACTTCCCGCCCGTCAGCC
GGGCAAGGCCGATGTGGCGTTGAACGGCGGTGCCGCGCGCAACAGCGTCCGGCTCGTCGCGTCGCCCTATGAAGCGCCGG
ATGCCAATGTCGAGACCGACTTCATGGCGCCGATCGATGTCGGCCGTCTCAGCCTGCGCTATCTGAGGACCGGTGATGAA
CTCGCCGGCTACGAACTCATCGGACTTGCCCGTATCATCGAGGTGCGTTCCGACAGGGCCGTGATCCTCGATCCGGACTA
TATTGTGCCGAGCCTCAACTGTACGGCTGCTGCACGGCTCGGCGAGCTGATCACCGAACTGCTCGGCATCGTGCGCCACC
GCGCGGAGGCCATCGCCGAACGGATCGGCGATCCCACCATTCGAGGGACCGCGGAGGTCGGCGACTACCTGCTCTTACAG
ATGCTCAACCGCGCGGATCCGATGCTGAAACACATTTCGGCGAATGCGACGCGGATCCACCCCATCGTCTTTTACGAGAC
CTGCATCCAGCTTGCCGGCGAGCTCGCCACCTTCACGACCGACCGCAAGCGCGCGAGCGACTTCCCGCCTTACCGCCACG
ACGACCTGAAGGCGACGTTCGCGGCCGTCTTCGACGATCTGCGCGCCTCGCTGTCATCAGTGCTCGAACAGGCAGCCGTG
GCGATCGAGTTGGCCGAACGCCGGCATGGCGTCAGGATCGGTACGATCAACGACCGTTCGCTGCTGAGAGATGCCGGCTT
CGTTCTGGCGGTCCGGGCCGAGATGCCGGCCGAAGACGTGCGCCGCAAGCTGCCGGCGCAGATCAAGATCGGCCCGGTTG
AGCGCATCGCCGACCTCGTCAACGTCGCGCTGCCGGGCATCCCCGTCCGGCCGCTGCCGGTGCTGCCACGCCAGCTCCCC
TATCGCTCCGGCACCATCTATTTCGAACTCGACACCAAGAACCCGCTTTGGAAACAACTCGACACTTCGGGCGCCATCGC
CGTGCATCTCGCCGGCGATTTTCCCGGGCTCGAAATAGAACTGTGGGCCCTTAGAGAATGA