Detailed information of component protein


Summary

Component ID T6CP012396
Component protein type FHA
T6SS ID (Type) T6SS00897 experimental (Type i5)
Strain Rhizobium leguminosarum bv. trifolii
Replicon chromosome
Sequence Protein sequence (400 a.a.); Nucleotide sequence (1200 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 9606..10805 (+)
NCBI ID 16326459
GenBank AF361470
Uniprot ID Q93EC5_RHILT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 1e-12 29..95
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-399 MRLELKEITRDAAAPAGQSKWFFERGRRTLGRAPDCDWRLPEDRRSVSKLHCIIERDREGFLLRDQSANGSRVDGVAVHEGQIVRLADRSRLELGGLAFSVHISGEKDREIEDPDAGLMLSDEPLTISAILADIAPGGHTANGILGERAVDDWGLPEKAGKKGAASSRNVEIGWSGPPEIRSVTQLLPEDWNSEETEYGSHLEHGSATHVSAPITQRRPAPVIEIVSDNDPQAEPEAEEFPALTIGRPEAFADRLEPLLARLEEAVQNSYAVFEINAPSAASEPVFLAASSREEALFARTETLLGQQLKLNSALEALVQTAGRLEPRMLEARVETGAWRLPWGRDRAYWRAYRAQFEQDGRSRSIHDVFRDAMTGAVNGTQAGPRPQDGQEGKDAHYEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9779 - -


  Protein sequence: 400 a.a.    

>T6CP012396 AF361470:9606-10805 [Rhizobium leguminosarum bv. trifolii] [FHA]
MRLELKEITRDAAAPAGQSKWFFERGRRTLGRAPDCDWRLPEDRRSVSKLHCIIERDREGFLLRDQSANGSRVDGVAVHE
GQIVRLADRSRLELGGLAFSVHISGEKDREIEDPDAGLMLSDEPLTISAILADIAPGGHTANGILGERAVDDWGLPEKAG
KKGAASSRNVEIGWSGPPEIRSVTQLLPEDWNSEETEYGSHLEHGSATHVSAPITQRRPAPVIEIVSDNDPQAEPEAEEF
PALTIGRPEAFADRLEPLLARLEEAVQNSYAVFEINAPSAASEPVFLAASSREEALFARTETLLGQQLKLNSALEALVQT
AGRLEPRMLEARVETGAWRLPWGRDRAYWRAYRAQFEQDGRSRSIHDVFRDAMTGAVNGTQAGPRPQDGQEGKDAHYEE*

  Nucleotide sequence: 1200 bp    

>T6CP012396 AF361470:9606-10805 [Rhizobium leguminosarum bv. trifolii] [FHA]
ATGCGGCTTGAACTGAAAGAGATCACCAGGGACGCGGCGGCGCCAGCAGGCCAGTCAAAATGGTTCTTCGAACGCGGCCG
GCGAACGCTCGGCCGGGCACCGGATTGCGACTGGCGCCTGCCGGAGGATCGGCGCTCCGTTTCGAAGCTCCATTGCATCA
TCGAGCGCGACCGCGAAGGCTTCCTGCTGCGCGACCAGAGCGCAAACGGCTCCCGGGTCGACGGCGTCGCCGTCCATGAG
GGCCAGATCGTGCGGCTTGCCGACAGGTCGCGGCTGGAGTTAGGCGGACTTGCCTTTTCCGTCCACATATCGGGCGAGAA
AGACCGCGAGATAGAGGACCCCGATGCCGGTCTCATGCTGAGTGACGAACCGCTGACCATCTCCGCAATCCTGGCCGATA
TCGCTCCGGGCGGTCATACCGCAAACGGCATCCTTGGCGAGCGTGCGGTCGATGATTGGGGCCTTCCCGAAAAGGCCGGG
AAAAAGGGAGCGGCCTCATCCCGCAATGTCGAGATCGGCTGGAGCGGCCCTCCGGAGATCCGCTCAGTCACCCAGCTTCT
GCCGGAGGATTGGAATTCGGAAGAAACCGAATATGGCAGCCACCTGGAACATGGCTCCGCCACCCATGTTTCCGCGCCCA
TCACTCAGCGCCGGCCGGCCCCGGTGATCGAGATCGTCAGCGACAACGATCCGCAGGCAGAGCCGGAGGCCGAGGAGTTT
CCGGCACTGACGATCGGCCGGCCCGAAGCCTTCGCCGATCGCCTGGAGCCACTGCTTGCCCGGCTCGAGGAGGCTGTCCA
GAATAGCTATGCCGTTTTCGAGATCAATGCGCCATCCGCCGCCAGCGAGCCGGTTTTCCTTGCCGCCAGCAGCAGGGAGG
AAGCGCTTTTTGCCCGCACCGAAACCCTGCTCGGGCAACAGCTCAAGCTCAATTCGGCGCTTGAGGCTCTGGTTCAGACA
GCGGGCCGGCTGGAGCCGCGCATGCTTGAGGCGCGGGTCGAGACCGGCGCCTGGCGCCTGCCCTGGGGCCGAGACCGGGC
CTATTGGCGCGCCTACCGGGCACAATTCGAACAGGACGGCAGGAGCCGGTCGATCCATGACGTTTTCCGCGACGCAATGA
CGGGGGCGGTAAACGGCACGCAGGCAGGGCCTCGTCCGCAAGACGGGCAGGAAGGAAAAGACGCGCATTATGAGGAATGA