Detailed information of component protein


Summary

Component ID T6CP010889
Component protein type TssC
T6SS ID (Type) T6SS00897 experimental (Type i5)
Strain Rhizobium leguminosarum bv. trifolii
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 2533..4014 (+)
NCBI ID 16326479
GenBank AF361470
Uniprot ID Q93ED1_RHILT
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.7e-135 65..369
VipB_2 PF18945.2 9.4e-47 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MTAETQLQTKEDVGFAPDENLLSKVVAATRQTEPDRAQDLLRTLTDQALKGTVTYDRNLTITLNNAIAEIDKAISGQLAAIMQSPEFTKLEGAWRGLNYLVKNSETSANLKIRVLNASKRDVAKDLAKAVEFDQSRLFKSVYEDEFGTPGGEPMGALIGDYEFDNSFDDVQLLQGVSMIAAAAFAPFISAASPRMFGFEDFRELAKPRDLEKIFETVEYAKWRSLRDSDDSRFVTLAMPRVLARMPYGPKTSPIEEFNFDETGGSKTGELSHGSYCWMNATYVMGTRLTEAFSKNGWCTAIRGAENGGKVEGLPMHIFSSDDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAHKPKLYDRPEATANAAVSARLPYMMATSRFAHYLKVMGRDKIGSFMEAEDCEAWLNRWISNYVNANDDAGEESRAKYPLREAKVTVQEIPGRPGAYNAVAWMRPWLQMEELTTSLRMVARIPSKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9907 - -


  Protein sequence: 494 a.a.    

>T6CP010889 AF361470:2533-4014 [Rhizobium leguminosarum bv. trifolii] [TssC]
MTAETQLQTKEDVGFAPDENLLSKVVAATRQTEPDRAQDLLRTLTDQALKGTVTYDRNLTITLNNAIAEIDKAISGQLAA
IMQSPEFTKLEGAWRGLNYLVKNSETSANLKIRVLNASKRDVAKDLAKAVEFDQSRLFKSVYEDEFGTPGGEPMGALIGD
YEFDNSFDDVQLLQGVSMIAAAAFAPFISAASPRMFGFEDFRELAKPRDLEKIFETVEYAKWRSLRDSDDSRFVTLAMPR
VLARMPYGPKTSPIEEFNFDETGGSKTGELSHGSYCWMNATYVMGTRLTEAFSKNGWCTAIRGAENGGKVEGLPMHIFSS
DDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAHKPKLYDRPEATANAAVSARLPYMMATSRFAH
YLKVMGRDKIGSFMEAEDCEAWLNRWISNYVNANDDAGEESRAKYPLREAKVTVQEIPGRPGAYNAVAWMRPWLQMEELT
TSLRMVARIPSKN*

  Nucleotide sequence: 1482 bp    

>T6CP010889 AF361470:2533-4014 [Rhizobium leguminosarum bv. trifolii] [TssC]
ATGACCGCCGAAACGCAATTGCAAACAAAGGAAGACGTAGGCTTCGCGCCTGATGAGAACCTGCTCTCGAAGGTCGTTGC
GGCAACCCGCCAGACCGAGCCAGACCGTGCCCAGGACCTTCTGCGCACCCTTACCGATCAAGCCCTGAAGGGCACCGTCA
CCTATGATCGCAACCTGACGATCACCTTGAACAATGCCATCGCCGAAATCGACAAGGCGATATCAGGTCAGCTCGCCGCC
ATCATGCAGTCGCCCGAGTTCACCAAGCTCGAAGGCGCTTGGCGCGGCCTGAACTATCTCGTCAAGAACAGCGAGACCAG
CGCCAATCTGAAGATCCGCGTCCTCAATGCATCCAAGCGCGATGTCGCCAAGGATCTGGCAAAGGCTGTCGAATTCGACC
AGTCGCGGCTCTTCAAGTCGGTCTATGAAGACGAGTTCGGCACGCCGGGCGGCGAACCGATGGGCGCGCTGATCGGCGAT
TACGAATTCGACAATTCCTTCGACGACGTCCAGCTTCTGCAGGGTGTGTCGATGATCGCCGCAGCGGCCTTCGCCCCGTT
CATCTCGGCCGCCAGCCCGCGCATGTTCGGCTTCGAGGATTTCCGGGAGCTCGCAAAACCCCGCGATCTCGAGAAGATCT
TCGAGACGGTTGAATACGCCAAGTGGCGCAGCCTGCGTGACAGCGATGATTCCCGCTTCGTGACGCTCGCCATGCCGCGC
GTGCTCGCCCGCATGCCCTACGGCCCGAAGACCAGCCCGATCGAGGAGTTCAACTTCGACGAAACCGGCGGTTCCAAGAC
CGGTGAGCTGTCGCACGGTTCCTACTGCTGGATGAACGCAACCTATGTGATGGGCACGCGTCTCACCGAGGCCTTCTCCA
AAAACGGCTGGTGCACTGCCATTCGCGGGGCGGAAAACGGCGGCAAGGTCGAAGGGCTTCCCATGCACATCTTCTCGAGC
GACGACGGCGATCTGGACCTGAAATGCCCGACGGAAGTCGGTATCACCGATCGCCGCGACGCCGAACTCGGCAAGCTCGG
CTTCCTGCCGCTCTGCCATTACAAGAATACGGACTATGCCGTGTTCTTCGGGGCGCAGACCGCGCATAAGCCGAAGCTCT
ACGATCGGCCCGAGGCGACTGCGAACGCGGCCGTTTCAGCCCGCCTGCCCTATATGATGGCGACCTCGCGCTTCGCCCAT
TATCTCAAGGTCATGGGCCGCGATAAGATCGGCTCCTTCATGGAGGCGGAAGATTGCGAGGCCTGGCTCAATCGCTGGAT
CTCCAACTATGTCAACGCCAATGACGACGCCGGCGAAGAGTCTCGGGCGAAATATCCGTTGCGCGAGGCAAAAGTCACCG
TCCAGGAAATCCCCGGCAGGCCTGGCGCTTACAACGCCGTGGCCTGGATGCGCCCGTGGCTGCAGATGGAGGAATTGACC
ACCTCGCTGCGCATGGTCGCCCGGATTCCCTCGAAGAACTGA