Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01261  |
| T6SS type | Type i5 |
| Strain | Rhizobium etli bv. mimosae str. Mim1 |
| Replicon (RefSeq) | plasmid pRetMIM1f (NC_021911) |
| Location | 489772..515517 |
| Function | - |
| Comment | Hcp protein was detected in extracts from Re Mim1 bean bacteroids and RpoA was only present in the cell extracts and not in the supernatants |
| References | [1] Salinero-Lanzarote A, Pacheco-Moreno A, Domingo-Serrano L, Dur��n D, Orme |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TagF | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| REMIM1_RS31705 | 484947..485099 | - | 153 | WP_041679394.1 | hypothetical protein | ||
| REMIM1_RS31710 | 485492..486202 | - | 711 | WP_020919492.1 | RNA polymerase sigma factor | ||
| REMIM1_RS31715 | 486238..486558 | - | 321 | WP_020919493.1 | cupredoxin family copper-binding protein | ||
| REMIM1_RS31720 | 486566..487087 | - | 522 | WP_020919494.1 | DUF4142 domain-containing protein | ||
| REMIM1_RS31725 | 487187..487534 | - | 348 | WP_020919495.1 | DUF488 domain-containing protein | ||
| REMIM1_RS31730 | 487735..488874 | + | 1140 | WP_020919496.1 | polysaccharide export protein | ||
| REMIM1_RS31735 | 488871..489782 | - | 912 | WP_020919497.1 | serine/threonine protein kinase | ||
| T6CP015726 | TagF | REMIM1_RS31740 (tagF) | 489772..491139 | - | 1368 | WP_020919498.1 | type VI secretion system-associated protein TagF |
| T6CP015727 | TssM | REMIM1_RS31745 (tssM) | 491148..494624 | - | 3477 | WP_020919499.1 | type VI secretion system membrane subunit TssM |
| T6CP015728 | TssL | REMIM1_RS31750 (tssL) | 494624..496162 | - | 1539 | WP_020919500.1 | type VI secretion system protein TssL, long form |
| T6CP015729 | TssK | REMIM1_RS31755 (tssK) | 496159..497499 | - | 1341 | WP_020919501.1 | type VI secretion system baseplate subunit TssK |
| REMIM1_RS31760 | 497489..498673 | - | 1185 | WP_020919502.1 | FHA domain-containing protein | ||
| T6CP015730 | TssG | REMIM1_RS31765 (tssG) | 498684..499685 | - | 1002 | WP_020919503.1 | type VI secretion system baseplate subunit TssG |
| T6CP015731 | TssF | REMIM1_RS31770 (tssF) | 499706..501487 | - | 1782 | WP_020919504.1 | type VI secretion system baseplate subunit TssF |
| T6CP015732 | TssE | REMIM1_RS31775 (tssE) | 501480..501989 | - | 510 | WP_020919505.1 | type VI secretion system baseplate subunit TssE |
| REMIM1_RS31780 | 501982..502812 | - | 831 | WP_020919506.1 | type VI secretion system ImpE family protein | ||
| T6CP015733 | TssC | REMIM1_RS31785 (tssC) | 502809..504197 | - | 1389 | WP_020919507.1 | type VI secretion system contractile sheath large subunit |
| T6CP015734 | TssC | REMIM1_RS31790 (tssC) | 504268..505749 | - | 1482 | WP_020919508.1 | type VI secretion system contractile sheath large subunit |
| T6CP015735 | TssB | REMIM1_RS31795 (tssB) | 505879..506403 | - | 525 | WP_041679311.1 | type VI secretion system contractile sheath small subunit |
| T6CP015736 | TssA | REMIM1_RS31800 (tssA) | 506486..507628 | - | 1143 | WP_080655899.1 | type VI secretion system protein TssA |
| T6CP015737 | TssH | REMIM1_RS31805 (tssH) | 507781..510540 | + | 2760 | WP_041679313.1 | type VI secretion system ATPase TssH |
| T6CP015738 | TssD | REMIM1_RS31810 | 510582..511058 | + | 477 | WP_009990920.1 | type VI secretion system tube protein Hcp |
| REMIM1_RS31815 | 511210..512286 | + | 1077 | WP_041679395.1 | hypothetical protein | ||
| REMIM1_RS31820 | 512330..513223 | + | 894 | WP_041679396.1 | hypothetical protein | ||
| T6CP015739 | TssI | REMIM1_RS31825 (tssI) | 513253..515517 | + | 2265 | WP_020919514.1 | type VI secretion system tip protein VgrG |
| REMIM1_RS31830 | 515531..516640 | + | 1110 | WP_020919515.1 | DUF2169 domain-containing protein | ||
| REMIM1_RS35135 | 516637..518160 | + | 1524 | WP_020919516.1 | DUF4150 domain-containing protein | ||
| REMIM1_RS31840 | 518181..518891 | + | 711 | WP_020919517.1 | DUF1851 domain-containing protein | ||
| REMIM1_RS31845 | 518941..519663 | + | 723 | pseudogene | hypothetical protein | ||
| REMIM1_RS31850 | 519750..519944 | + | 195 | pseudogene | SMI1/KNR4 family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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