Detailed information of component protein


Summary

Component ID T6CP015734
Component protein type TssC
T6SS ID (Type) T6SS01261 experimental (Type i5)
Strain Rhizobium etli bv. mimosae str. Mim1
Replicon plasmid pRetMIM1f
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REMIM1_RS31790
Coordinate (Strand) 504268..505749 (-)
NCBI ID WP_020919508.1
RefSeq NC_021911
Uniprot ID S5S7X5_RHIET
KEGG ID rel:REMIM1_PF00473
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.7e-136 65..369
VipB_2 PF18945.2 9.4e-47 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MTAETQLQTKEEVGFAPDENLLSKVVAATRQTEPDRAQDLLRTLTDQALKGTVTYDRNLTITLNNAIAEIDKAISTQLAAIMQSPEFTKLEGAWRGLHYLVKNTETSANLKIRVLNASKRDVAKDLAKAVEFDQSRLFKSVYEDEFGTPGGEPMGALIGDYEFDNSFDDVQLLQGVSMIAAAAFAPFISAASPRMFGFEDFRELAKPRDLEKIFETVEYAKWRSLRDSDDSRFVTLAMPRVLARMPYGPKTSPIEEFNFDETGGSKTGELPHGSYCWMNAAYVMGTRLTEAFAKNGWCTAIRGAENGGKVEGLPMHIFSSDDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAHKPKLYDRPEATANAAVSARLPYMMATSRFAHYLKVMGRDKIGSFMEAEDCEAWLNRWISNYVNANDDAGEESRAKYPLREAKVTVQEIPGRPGAYNAVAWMRPWLQMEELTTSLRMVARIPSKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9902 - -


  Protein sequence: 494 a.a.    

>T6CP015734 NC_021911:c505749-504268 [Rhizobium etli bv. mimosae str. Mim1] [TssC]
MTAETQLQTKEEVGFAPDENLLSKVVAATRQTEPDRAQDLLRTLTDQALKGTVTYDRNLTITLNNAIAEIDKAISTQLAA
IMQSPEFTKLEGAWRGLHYLVKNTETSANLKIRVLNASKRDVAKDLAKAVEFDQSRLFKSVYEDEFGTPGGEPMGALIGD
YEFDNSFDDVQLLQGVSMIAAAAFAPFISAASPRMFGFEDFRELAKPRDLEKIFETVEYAKWRSLRDSDDSRFVTLAMPR
VLARMPYGPKTSPIEEFNFDETGGSKTGELPHGSYCWMNAAYVMGTRLTEAFAKNGWCTAIRGAENGGKVEGLPMHIFSS
DDGDLDLKCPTEVGITDRRDAELGKLGFLPLCHYKNTDYAVFFGAQTAHKPKLYDRPEATANAAVSARLPYMMATSRFAH
YLKVMGRDKIGSFMEAEDCEAWLNRWISNYVNANDDAGEESRAKYPLREAKVTVQEIPGRPGAYNAVAWMRPWLQMEELT
TSLRMVARIPSKN*

  Nucleotide sequence: 1482 bp    

>T6CP015734 NC_021911:c505749-504268 [Rhizobium etli bv. mimosae str. Mim1] [TssC]
ATGACCGCCGAAACGCAATTGCAGACAAAGGAAGAGGTAGGCTTCGCACCCGATGAGAACCTGCTCTCGAAGGTCGTTGC
GGCAACCCGCCAGACCGAGCCCGACCGTGCGCAGGATCTTCTACGCACCCTCACCGATCAAGCCCTGAAGGGCACCGTCA
CCTATGATCGCAATCTGACGATCACCTTGAACAACGCCATTGCTGAGATCGACAAGGCGATCTCGACCCAGCTCGCGGCG
ATCATGCAGTCGCCGGAGTTCACCAAGCTCGAAGGCGCCTGGCGCGGCCTGCACTATCTCGTCAAGAACACCGAGACCAG
CGCCAACCTGAAGATCCGCGTGCTCAACGCCTCCAAGCGCGACGTCGCCAAGGATCTCGCCAAGGCCGTCGAGTTCGACC
AGTCCAGGCTCTTCAAGTCGGTCTACGAAGACGAATTCGGCACACCCGGCGGCGAACCGATGGGCGCGCTGATCGGCGAT
TATGAATTCGACAATTCCTTCGACGACGTCCAGCTTCTGCAAGGCGTCTCGATGATCGCCGCCGCCGCCTTCGCACCGTT
CATCTCGGCGGCGAGCCCGCGCATGTTCGGCTTCGAGGATTTCCGCGAGCTGGCAAAACCGCGCGATCTGGAAAAGATCT
TCGAGACGGTGGAATACGCCAAGTGGCGCAGCCTGCGCGACAGCGATGATTCCCGCTTCGTGACGCTCGCCATGCCGCGC
GTGCTCGCCCGCATGCCTTACGGTCCGAAGACCAGCCCGATCGAGGAATTCAACTTCGACGAAACCGGCGGCTCCAAAAC
CGGCGAGCTGCCGCACGGCTCCTATTGCTGGATGAACGCGGCCTATGTGATGGGCACGCGCCTGACCGAAGCCTTCGCCA
AGAACGGCTGGTGCACCGCCATTCGCGGCGCGGAAAACGGTGGCAAGGTCGAAGGCCTGCCGATGCATATCTTCTCCAGC
GACGACGGCGATCTCGATCTGAAATGCCCGACGGAAGTCGGCATCACCGATCGCCGCGATGCCGAACTCGGAAAGCTCGG
CTTCCTGCCGCTCTGCCACTACAAGAATACCGACTACGCGGTGTTCTTCGGGGCGCAGACGGCCCACAAGCCGAAGCTCT
ACGACCGGCCCGAGGCGACCGCCAATGCCGCCGTTTCCGCCCGCCTGCCCTACATGATGGCGACCTCGCGCTTTGCCCAT
TACCTCAAGGTCATGGGCCGCGATAAGATCGGCTCCTTCATGGAAGCGGAGGATTGCGAGGCCTGGCTCAATCGCTGGAT
CTCCAACTACGTCAACGCCAACGACGACGCCGGCGAGGAGTCGCGGGCGAAATATCCGCTGCGCGAGGCAAAGGTCACCG
TCCAGGAAATCCCCGGTAGGCCGGGCGCCTACAACGCGGTAGCCTGGATGCGTCCCTGGTTGCAGATGGAGGAATTGACC
ACCTCGCTGCGCATGGTCGCCCGGATTCCTTCGAAGAACTGA