Detailed information of component protein


Summary

Component ID T6CP015729
Component protein type TssK
T6SS ID (Type) T6SS01261 experimental (Type i5)
Strain Rhizobium etli bv. mimosae str. Mim1
Replicon plasmid pRetMIM1f
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REMIM1_RS31755
Coordinate (Strand) 496159..497499 (-)
NCBI ID WP_020919501.1
RefSeq NC_021911
Uniprot ID S5SFR9_RHIET
KEGG ID rel:REMIM1_PF00466
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.7e-149 19..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MRNENRVAWSEGMFLRVQHFQQADRWTERLVRTATHGLSPYPWGIAEIGIDRGALAIGQFALSNLRGVLPDGTPFEAPVDADLPPPLDLDENTKNAIVYLALPARQPGKADVALNGGAQRNSVRLVASPYEAPDANVETDFMAPIDVGRLSLRYLKTGDELAGYELIGLARIIEVRSDRAVILDPDYILPSLNCTAAGRLNELITELLGIVRHRAEAIAERIGDPTIRGTAEVGDYLLLQILNRADPMLKHISANATRIHPIVFYEHCIQLAGELATFTTERKRASDFAPYRHDDLKATFAAVFDDLRASLSSVLEQAAVAIGLAERRHGVRIGTINDRTLLRDAGFVLAVRAEMPAEDVRRKLPAQIKVGPVERIADLVNVALPGIPVRPLPVLPRQLPYRSGTIYFELDTKNPLWKQLDTSGAIAVHLAGDFPGLEIELWALRE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9764 - -


  Protein sequence: 447 a.a.    

>T6CP015729 NC_021911:c497499-496159 [Rhizobium etli bv. mimosae str. Mim1] [TssK]
MRNENRVAWSEGMFLRVQHFQQADRWTERLVRTATHGLSPYPWGIAEIGIDRGALAIGQFALSNLRGVLPDGTPFEAPVD
ADLPPPLDLDENTKNAIVYLALPARQPGKADVALNGGAQRNSVRLVASPYEAPDANVETDFMAPIDVGRLSLRYLKTGDE
LAGYELIGLARIIEVRSDRAVILDPDYILPSLNCTAAGRLNELITELLGIVRHRAEAIAERIGDPTIRGTAEVGDYLLLQ
ILNRADPMLKHISANATRIHPIVFYEHCIQLAGELATFTTERKRASDFAPYRHDDLKATFAAVFDDLRASLSSVLEQAAV
AIGLAERRHGVRIGTINDRTLLRDAGFVLAVRAEMPAEDVRRKLPAQIKVGPVERIADLVNVALPGIPVRPLPVLPRQLP
YRSGTIYFELDTKNPLWKQLDTSGAIAVHLAGDFPGLEIELWALRE*

  Nucleotide sequence: 1341 bp    

>T6CP015729 NC_021911:c497499-496159 [Rhizobium etli bv. mimosae str. Mim1] [TssK]
ATGAGGAATGAGAACCGGGTGGCCTGGAGCGAGGGCATGTTCCTTCGCGTGCAGCATTTTCAGCAGGCGGACCGCTGGAC
CGAACGGCTCGTGCGCACCGCCACGCACGGCCTGTCGCCCTATCCCTGGGGAATAGCGGAGATCGGCATCGACCGCGGCG
CGCTGGCGATCGGCCAGTTCGCGCTGTCGAACCTGCGCGGCGTATTGCCCGACGGCACGCCGTTCGAAGCGCCCGTCGAT
GCCGACCTGCCGCCGCCGCTCGATCTCGACGAGAACACCAAGAATGCGATTGTCTATCTCGCACTTCCCGCGCGCCAGCC
CGGAAAGGCTGATGTGGCGCTAAACGGCGGCGCTCAGCGCAACAGCGTTCGCCTCGTGGCCTCGCCCTATGAGGCGCCTG
ACGCCAATGTCGAAACCGACTTCATGGCGCCGATCGACGTCGGCCGCCTCAGCCTGCGTTATCTCAAGACCGGCGACGAG
CTTGCCGGCTATGAACTGATCGGACTTGCCCGCATCATCGAGGTGCGCTCCGACAGGGCTGTCATTCTCGACCCAGATTA
CATCCTGCCTAGCCTCAACTGCACGGCCGCCGGCCGGTTGAACGAATTGATCACCGAGCTTCTCGGCATCGTGCGCCACC
GCGCCGAAGCCATTGCCGAACGCATCGGCGACCCCACCATCCGCGGCACGGCGGAGGTCGGCGACTACCTGCTCCTGCAA
ATCCTCAATCGCGCCGATCCGATGCTGAAGCATATCTCGGCCAATGCCACGCGCATCCATCCGATCGTCTTTTACGAGCA
CTGCATCCAGCTCGCCGGTGAGCTCGCCACCTTCACGACCGAGCGCAAGCGGGCGAGCGATTTCGCCCCCTACCGGCATG
ACGATCTAAAGGCGACCTTCGCTGCTGTCTTCGATGATCTAAGAGCCTCGCTTTCCTCCGTGCTCGAACAGGCGGCTGTG
GCGATTGGGCTTGCCGAGCGCCGGCATGGTGTCCGGATCGGTACGATCAACGACCGCACCCTGCTTCGCGATGCCGGCTT
CGTGCTGGCCGTCCGGGCAGAGATGCCGGCCGAGGACGTGCGCCGCAAGCTGCCGGCGCAGATTAAGGTCGGTCCGGTCG
AACGCATCGCCGATCTCGTCAACGTGGCGCTGCCGGGCATTCCCGTGCGGCCGCTGCCGGTGCTGCCGCGCCAGCTCCCC
TATCGCTCCGGCACCATCTACTTCGAACTCGACACCAAGAATCCGCTCTGGAAACAACTCGACACTTCGGGCGCCATCGC
GGTGCATCTCGCCGGCGATTTCCCCGGGCTCGAAATAGAATTGTGGGCCCTTAGAGAATGA