Detailed information of component protein


Summary

Component ID T6CP015737
Component protein type TssH
T6SS ID (Type) T6SS01261 experimental (Type i5)
Strain Rhizobium etli bv. mimosae str. Mim1
Replicon plasmid pRetMIM1f
Sequence Protein sequence (920 a.a.); Nucleotide sequence (2760 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REMIM1_RS31805
Coordinate (Strand) 507781..510540 (+)
NCBI ID WP_041679313.1
RefSeq NC_021911
Uniprot ID UPI0005A20788
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.4e-39 615..779
AAA_lid_9 PF17871.3 1.8e-28 354..451
ClpB_D2-small PF10431.11 3.5e-11 787..859
AAA PF00004.31 3.5e-10 214..326
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-919 MSNIDLNRLIRTLEPNLRVGLETAASLAVRHQHAVVDVAHWLRSLLDIAAFSAVFEELKLSSEMLRTELDAAIADIPREAGAALALSANLLALGRESFLVASLQCGRNVVLLADLLAALTGDSALRVVVRGIAPSIRNLDRAMLDKLLEKAAAGPSDQLSVPTATSAGNEFLRLYTHDMTADARAGRIDPVIGRDAELRQLIDILTRRRQNNPILVGEAGVGKTAVAEALALEIAAGNIPARLKDVKLLLLDLSLLQAGAGVKGEFERRLHGVVDAVKTSPEPIILFIDEAHGLIGAGGQAGQGDAANILKPALARGELRTIAATTWSEYKRFIEKDAALTRRFQTVHVREPDEEAAIRMLRGVAQSLKIHHKVRIRDEAIVAAVRLSARYLPDRQLPDKAISLIDTAAAAVALARQTRPEALKQLTDERDLLETEANWLAREPETPEKAARLGEIAVKQQEIVAQIEALRSQFEEENRLVREADRLEDFFSPDDAIVPLAPADSGDGTNVAPFPPQAMTTEAARAAFAVTERTLAAVADQTALLPRVVDKDVVASIVARWTGIPVGKLLADQIETVKTLDARLKERVLGQDAAIERIASAMRAARAGLSDPRRPPAVFLLVGMSGTGKTETALSLADMLYGGSRYLTTINMSEFKEEHKISMLLGSPPGYVGYGEGGVLTEAVRRRPYGVLLLDEIDKAHPGVQEIFYQVFDKGTLRDGEGRDIDFKNTTIVMTANTGSEMIAALAADPETMPEAEALEAMLLPELQKHFKPAFLGRTTVLPFMPLGPETLSGIVDIQIGRIRERVGASYGAALSLSPQAREALISRGRTSEMGARAIEVMIARDLLPVLSTYFLDAVAAGKKIKGIAINYDGHRFGLDAEEAAAQEFGTPGESRLSDEVAPGRKRTRGAGRRKATTP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9976 - -


  Protein sequence: 920 a.a.    

>T6CP015737 NC_021911:507781-510540 [Rhizobium etli bv. mimosae str. Mim1] [TssH]
MSNIDLNRLIRTLEPNLRVGLETAASLAVRHQHAVVDVAHWLRSLLDIAAFSAVFEELKLSSEMLRTELDAAIADIPREA
GAALALSANLLALGRESFLVASLQCGRNVVLLADLLAALTGDSALRVVVRGIAPSIRNLDRAMLDKLLEKAAAGPSDQLS
VPTATSAGNEFLRLYTHDMTADARAGRIDPVIGRDAELRQLIDILTRRRQNNPILVGEAGVGKTAVAEALALEIAAGNIP
ARLKDVKLLLLDLSLLQAGAGVKGEFERRLHGVVDAVKTSPEPIILFIDEAHGLIGAGGQAGQGDAANILKPALARGELR
TIAATTWSEYKRFIEKDAALTRRFQTVHVREPDEEAAIRMLRGVAQSLKIHHKVRIRDEAIVAAVRLSARYLPDRQLPDK
AISLIDTAAAAVALARQTRPEALKQLTDERDLLETEANWLAREPETPEKAARLGEIAVKQQEIVAQIEALRSQFEEENRL
VREADRLEDFFSPDDAIVPLAPADSGDGTNVAPFPPQAMTTEAARAAFAVTERTLAAVADQTALLPRVVDKDVVASIVAR
WTGIPVGKLLADQIETVKTLDARLKERVLGQDAAIERIASAMRAARAGLSDPRRPPAVFLLVGMSGTGKTETALSLADML
YGGSRYLTTINMSEFKEEHKISMLLGSPPGYVGYGEGGVLTEAVRRRPYGVLLLDEIDKAHPGVQEIFYQVFDKGTLRDG
EGRDIDFKNTTIVMTANTGSEMIAALAADPETMPEAEALEAMLLPELQKHFKPAFLGRTTVLPFMPLGPETLSGIVDIQI
GRIRERVGASYGAALSLSPQAREALISRGRTSEMGARAIEVMIARDLLPVLSTYFLDAVAAGKKIKGIAINYDGHRFGLD
AEEAAAQEFGTPGESRLSDEVAPGRKRTRGAGRRKATTP*

  Nucleotide sequence: 2760 bp    

>T6CP015737 NC_021911:507781-510540 [Rhizobium etli bv. mimosae str. Mim1] [TssH]
ATGTCGAATATCGATCTCAATCGTCTGATAAGAACGCTTGAGCCCAATTTACGTGTCGGACTTGAGACAGCGGCTTCGCT
CGCCGTGCGTCACCAGCATGCCGTCGTGGATGTCGCGCATTGGCTTCGCTCCCTTCTTGATATTGCGGCGTTTTCCGCCG
TTTTCGAAGAGCTCAAGCTCTCCTCGGAAATGCTGAGAACGGAGCTGGACGCGGCGATCGCCGACATTCCGCGGGAGGCC
GGCGCCGCACTGGCGCTCTCCGCCAACCTGCTGGCCCTTGGCCGGGAATCCTTCCTGGTTGCATCGCTGCAGTGCGGCCG
TAATGTCGTGCTACTGGCCGACCTGCTCGCAGCCCTGACCGGCGATTCGGCATTGCGGGTGGTTGTGCGCGGCATTGCTC
CCTCGATACGCAATCTCGACCGGGCAATGCTCGACAAATTGCTGGAGAAGGCGGCCGCTGGCCCGTCGGACCAGCTTTCG
GTGCCCACCGCGACATCGGCAGGCAATGAATTTCTGCGGCTCTACACGCACGACATGACGGCCGACGCCCGCGCGGGCCG
CATCGATCCTGTTATCGGCCGCGACGCTGAGTTGCGGCAGCTGATCGATATACTGACGCGCCGTCGGCAGAACAACCCGA
TCCTGGTCGGCGAGGCTGGTGTCGGCAAGACTGCTGTGGCCGAAGCGCTCGCATTGGAGATCGCCGCCGGCAATATTCCG
GCCCGGCTGAAGGATGTGAAGCTGCTGCTGCTGGATCTGAGCCTGCTGCAGGCCGGCGCCGGCGTCAAAGGCGAGTTCGA
ACGGCGCCTGCATGGCGTGGTCGACGCGGTAAAGACGTCACCGGAACCGATCATCCTGTTCATTGACGAGGCGCACGGGC
TGATCGGCGCCGGCGGACAGGCAGGGCAAGGCGATGCCGCAAACATCCTGAAACCGGCTTTGGCGCGCGGAGAACTCAGG
ACTATCGCGGCAACGACCTGGAGCGAATATAAACGCTTCATCGAGAAAGATGCGGCCCTGACCCGCCGCTTCCAGACCGT
GCATGTCCGCGAGCCGGACGAAGAGGCTGCAATCCGGATGCTGCGCGGCGTGGCGCAAAGCCTGAAAATCCATCACAAGG
TGCGCATTCGCGACGAGGCGATCGTCGCCGCCGTCCGCCTTTCGGCGCGATACCTGCCGGACCGGCAGCTTCCCGATAAG
GCGATCAGCCTGATCGACACGGCTGCCGCCGCCGTGGCGCTGGCTCGCCAGACGAGGCCGGAGGCTTTGAAACAGCTTAC
CGATGAACGCGATCTCTTGGAAACCGAGGCTAACTGGCTTGCGCGAGAACCCGAGACACCGGAAAAGGCCGCCCGGCTTG
GCGAAATCGCCGTCAAGCAGCAGGAGATCGTTGCGCAGATCGAAGCGCTCCGGTCGCAGTTCGAGGAAGAAAATCGGCTG
GTCCGCGAGGCCGACCGGCTGGAGGATTTCTTCTCGCCGGACGATGCCATCGTCCCGTTGGCGCCGGCGGACAGTGGCGA
CGGCACGAATGTCGCGCCTTTCCCGCCGCAGGCCATGACCACGGAAGCCGCCCGCGCCGCCTTTGCCGTGACCGAACGGA
CACTCGCGGCGGTGGCCGATCAAACGGCCCTATTGCCGCGCGTCGTCGACAAGGACGTCGTTGCATCAATCGTTGCCCGC
TGGACCGGAATTCCTGTCGGCAAGCTGTTGGCCGACCAGATCGAAACCGTCAAGACACTGGATGCCCGCCTGAAGGAGAG
GGTGCTCGGCCAGGACGCTGCGATCGAACGCATCGCTTCGGCCATGCGGGCCGCCCGCGCCGGACTTTCCGATCCGCGCC
GGCCGCCGGCCGTCTTCCTGCTCGTCGGCATGTCCGGCACCGGCAAGACCGAGACGGCGCTGTCGCTTGCCGACATGCTC
TATGGCGGCAGCCGGTATCTCACGACCATCAACATGTCCGAGTTCAAGGAGGAGCATAAGATTTCCATGCTTCTCGGCTC
GCCCCCCGGTTACGTCGGTTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTGAGGCGCAGGCCCTATGGGGTGCTGCTGC
TCGACGAGATCGACAAGGCCCATCCCGGCGTTCAGGAAATCTTCTACCAGGTGTTCGACAAGGGAACGCTGCGCGACGGC
GAAGGCCGCGACATCGATTTCAAGAACACCACCATCGTTATGACCGCCAATACCGGTTCGGAAATGATCGCCGCACTTGC
CGCCGATCCCGAGACGATGCCGGAGGCGGAAGCGCTGGAGGCGATGCTGCTGCCGGAATTGCAGAAGCATTTCAAGCCGG
CCTTCCTCGGCCGCACGACGGTGCTGCCCTTCATGCCGCTTGGGCCGGAGACGCTGTCCGGCATCGTCGATATCCAGATC
GGCCGCATCCGCGAGCGGGTGGGCGCCAGCTACGGCGCGGCGCTTTCGCTCTCGCCGCAAGCGCGCGAGGCGCTGATTTC
CCGCGGCCGCACGAGCGAGATGGGCGCTCGCGCAATCGAGGTCATGATCGCCCGCGACCTCCTGCCTGTTCTTTCGACCT
ATTTCCTCGATGCCGTCGCGGCCGGGAAGAAGATCAAAGGGATCGCCATCAATTATGACGGCCATCGCTTCGGCCTCGAC
GCCGAGGAGGCCGCCGCACAGGAATTCGGCACGCCGGGGGAAAGCCGGTTGTCGGATGAAGTAGCCCCGGGCCGCAAGCG
CACTCGGGGAGCAGGACGAAGAAAGGCGACTACGCCTTAG