Detailed information of component protein


Summary

Component ID T6CP015733
Component protein type TssC
T6SS ID (Type) T6SS01261 experimental (Type i5)
Strain Rhizobium etli bv. mimosae str. Mim1
Replicon plasmid pRetMIM1f
Sequence Protein sequence (463 a.a.); Nucleotide sequence (1389 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REMIM1_RS31785
Coordinate (Strand) 502809..504197 (-)
NCBI ID WP_020919507.1
RefSeq NC_021911
Uniprot ID S5SWA0_RHIET
KEGG ID rel:REMIM1_PF00472
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.3e-103 12..323
VipB_2 PF18945.2 5.2e-38 333..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-462 MGSSTEWRRRADQLITLIDEALNRQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLSVSWRELARSMERASDFDQSHLFELIYSREFGMPGGEPFGLLVGDYHLSPADPADGDPVSTLSQIGMVAAAAFCPFVAGAAPAAIGLEDFHELNRVNDFSWLATEADRIRWNGLRAREDSRFLGLAAPRILMRSPLTPHARDRNDGFPFRESIAADGSSLLWGNAAFAFATVVIRNFINSGWFADIRGVTQDAVDGGLLSAAELPPYDFGTESNGLSAQAPVEIHLTSSQEQQLCELGIIPAATTYLSSSAIFNSNQSLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLSDAISIERKLMDWLTAYTLGNDDADIALRTRFPLRSAGISVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAMPERMSA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9961 - -


  Protein sequence: 463 a.a.    

>T6CP015733 NC_021911:c504197-502809 [Rhizobium etli bv. mimosae str. Mim1] [TssC]
MGSSTEWRRRADQLITLIDEALNRQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLSVSWRELARSMERASDF
DQSHLFELIYSREFGMPGGEPFGLLVGDYHLSPADPADGDPVSTLSQIGMVAAAAFCPFVAGAAPAAIGLEDFHELNRVN
DFSWLATEADRIRWNGLRAREDSRFLGLAAPRILMRSPLTPHARDRNDGFPFRESIAADGSSLLWGNAAFAFATVVIRNF
INSGWFADIRGVTQDAVDGGLLSAAELPPYDFGTESNGLSAQAPVEIHLTSSQEQQLCELGIIPAATTYLSSSAIFNSNQ
SLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLSDAISIERKLMDWLTAYTLGNDDADIALRTRFP
LRSAGISVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAMPERMSA*

  Nucleotide sequence: 1389 bp    

>T6CP015733 NC_021911:c504197-502809 [Rhizobium etli bv. mimosae str. Mim1] [TssC]
ATGGGTTCCAGCACTGAATGGCGGCGCCGGGCGGATCAGCTGATTACGCTGATCGACGAAGCGCTGAACAGGCAAGTCAA
CGCCATCCTCCACCATCCCGATTTTCAGGCGATGGAGGCGAGATGGCGCGGCCTTGCCATGCTCGTGCGCGAGGCAAGCC
GCAGCGGCGAAGTCAAGGTCAAGCTGCTCAGCGTCAGCTGGCGCGAACTGGCGCGCAGCATGGAGCGCGCCAGCGATTTC
GACCAGAGCCATCTGTTCGAACTGATCTACAGCCGCGAATTCGGCATGCCGGGCGGCGAGCCCTTCGGCCTCTTGGTCGG
CGACTATCATCTGTCTCCGGCCGATCCCGCCGACGGCGATCCGGTCAGCACGCTGTCGCAGATCGGCATGGTGGCCGCCG
CCGCCTTCTGCCCCTTCGTCGCGGGCGCTGCGCCGGCTGCGATCGGGCTTGAGGATTTTCACGAACTGAACCGGGTGAAT
GACTTCTCCTGGCTTGCCACCGAGGCGGACCGCATCCGCTGGAACGGTCTTCGCGCCCGTGAGGATTCGCGTTTCCTCGG
GCTTGCCGCGCCGCGCATCCTGATGCGCTCGCCGCTCACACCGCATGCGCGCGATCGCAACGACGGCTTTCCCTTCCGCG
AAAGCATTGCCGCCGACGGCAGTTCGCTGCTCTGGGGCAATGCCGCCTTTGCCTTCGCGACCGTCGTCATCAGGAATTTC
ATCAATTCCGGCTGGTTCGCCGATATCCGCGGCGTCACGCAGGATGCCGTCGACGGCGGCTTGCTGAGTGCGGCCGAATT
GCCGCCATACGATTTCGGCACCGAAAGCAACGGCCTGTCAGCTCAGGCGCCTGTCGAAATCCACCTGACCAGCAGCCAGG
AGCAGCAACTCTGCGAGCTCGGCATTATCCCGGCGGCGACCACCTATCTCTCGTCTTCGGCGATTTTCAATTCCAACCAG
TCGCTGCACGCGCCGCCGCATTATTCCAACGAACATGCGCGCCAGAACGCGCGGCTCGCCGCCATGCTGCAATATGTGCT
CTGCGCCTCGCGCTTCTCGCATTATCTCAAGGTCATCATGCGCGACGAGATCGGCCAGCTCTCCGATGCGATCTCGATCG
AGCGCAAGCTCATGGACTGGCTGACCGCCTATACGCTCGGCAACGACGACGCCGATATCGCGCTGCGCACCCGCTTTCCG
CTGCGCTCCGCAGGCATCAGCGTCGCCGAAATTCCGGGCAAGCCCGGCAGCTTCTCCTGCACCGTCCGCCTGCAGCCGCA
TTTCCAGCTCGATGACGTCGCCACGAGCTTCCACCTGATCGCCGAGACCGCGACCACGGGCCAGATCCTGAGCCGGCCGG
TCGCCATGCCCGAGAGGATGTCCGCATGA