Detailed information of component protein
Summary
| Component ID | T6CP015735 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01261  (Type i5) |
| Strain | Rhizobium etli bv. mimosae str. Mim1 |
| Replicon | plasmid pRetMIM1f |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | REMIM1_RS31795 |
| Coordinate (Strand) | 505879..506403 (-) |
| NCBI ID | WP_041679311.1 |
| RefSeq | NC_021911 |
| Uniprot ID | UPI0004011CD4 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 6e-61 | 9..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-174 | MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKAFGERKFVQIDRDNFDDVMRRMTPGLTLSVENTLEKDGTELPVSLKFESMADFEPGAVVDQVPALKALLNARNQLRDLMSKADRSEELERLLEEILQNKADLSQLVAQLGGGKAGEAKDVLN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9974 | - | - |
Protein sequence: 175 a.a.
>T6CP015735 NC_021911:c506403-505879 [Rhizobium etli bv. mimosae str. Mim1] [TssB]
MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKAFGERKFVQIDRDNFDDVMRRMTPGLTL
SVENTLEKDGTELPVSLKFESMADFEPGAVVDQVPALKALLNARNQLRDLMSKADRSEELERLLEEILQNKADLSQLVAQ
LGGGKAGEAKDVLN*
MASVHEKLERVRKPRVHIKYEVETEGAMVVKELPFVVGVLGDFSGNPTQPLKAFGERKFVQIDRDNFDDVMRRMTPGLTL
SVENTLEKDGTELPVSLKFESMADFEPGAVVDQVPALKALLNARNQLRDLMSKADRSEELERLLEEILQNKADLSQLVAQ
LGGGKAGEAKDVLN*
Nucleotide sequence: 525 bp
>T6CP015735 NC_021911:c506403-505879 [Rhizobium etli bv. mimosae str. Mim1] [TssB]
ATGGCAAGTGTACATGAAAAACTGGAACGGGTTCGCAAGCCGCGGGTCCATATCAAATATGAAGTCGAAACCGAAGGCGC
GATGGTGGTGAAGGAGCTGCCTTTCGTCGTCGGCGTGCTCGGCGACTTCTCCGGCAATCCGACACAGCCTCTCAAGGCTT
TCGGCGAGCGCAAGTTCGTGCAGATCGACCGCGACAATTTCGACGACGTCATGCGCCGGATGACGCCGGGCCTCACGCTT
TCGGTCGAGAACACTCTCGAGAAAGACGGAACGGAGCTTCCGGTTTCACTGAAATTCGAAAGCATGGCCGACTTCGAACC
GGGCGCGGTCGTCGATCAGGTGCCGGCGCTGAAGGCGCTGCTCAACGCCCGCAACCAGCTGCGCGACCTGATGAGCAAGG
CGGACCGCTCCGAGGAGCTCGAGCGCCTGCTCGAGGAGATCCTGCAGAACAAGGCCGATCTCTCGCAGCTGGTGGCTCAG
CTTGGCGGCGGCAAGGCCGGCGAGGCGAAGGACGTTCTGAACTGA
ATGGCAAGTGTACATGAAAAACTGGAACGGGTTCGCAAGCCGCGGGTCCATATCAAATATGAAGTCGAAACCGAAGGCGC
GATGGTGGTGAAGGAGCTGCCTTTCGTCGTCGGCGTGCTCGGCGACTTCTCCGGCAATCCGACACAGCCTCTCAAGGCTT
TCGGCGAGCGCAAGTTCGTGCAGATCGACCGCGACAATTTCGACGACGTCATGCGCCGGATGACGCCGGGCCTCACGCTT
TCGGTCGAGAACACTCTCGAGAAAGACGGAACGGAGCTTCCGGTTTCACTGAAATTCGAAAGCATGGCCGACTTCGAACC
GGGCGCGGTCGTCGATCAGGTGCCGGCGCTGAAGGCGCTGCTCAACGCCCGCAACCAGCTGCGCGACCTGATGAGCAAGG
CGGACCGCTCCGAGGAGCTCGAGCGCCTGCTCGAGGAGATCCTGCAGAACAAGGCCGATCTCTCGCAGCTGGTGGCTCAG
CTTGGCGGCGGCAAGGCCGGCGAGGCGAAGGACGTTCTGAACTGA