Detailed information of component protein
Summary
| Component ID | T6CP015738 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01261  (Type i5) |
| Strain | Rhizobium etli bv. mimosae str. Mim1 |
| Replicon | plasmid pRetMIM1f |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | REMIM1_RS31810 |
| Coordinate (Strand) | 510582..511058 (+) |
| NCBI ID | WP_009990920.1 |
| RefSeq | NC_021911 |
| Uniprot ID | A0A1C3Y3C8_9HYPH, A0A060IB61_9HYPH, A0A2A6LBY7_9HYPH, S5SWA4_RHIET, A0A7U4L9F2_RHIET, A0A2A5KP19_9HYPH, A0A246SYH2_9HYPH, A0A246ST99_9HYPH, A0A2A6R4C5_9HYPH, A0A2A6JVP7_9HYPH, A0A7W7EFN4_RHIET |
| KEGG ID | rel:REMIM1_PF00477, rei:IE4771_PD00442 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.2e-33 | 4..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MPIYLQIDGIQGDATHEQHRKWMDIEAIHWNVSRNMNTSAGSAANREASEPTVSEVILTKVSDSSSTKLFQEACSGRTGKRSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVETIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9880 | - | - |
Protein sequence: 159 a.a.
>T6CP015738 NC_021911:510582-511058 [Rhizobium etli bv. mimosae str. Mim1] [TssD]
MPIYLQIDGIQGDATHEQHRKWMDIEAIHWNVSRNMNTSAGSAANREASEPTVSEVILTKVSDSSSTKLFQEACSGRTGK
RSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVETIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA*
MPIYLQIDGIQGDATHEQHRKWMDIEAIHWNVSRNMNTSAGSAANREASEPTVSEVILTKVSDSSSTKLFQEACSGRTGK
RSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVETIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA*
Nucleotide sequence: 477 bp
>T6CP015738 NC_021911:510582-511058 [Rhizobium etli bv. mimosae str. Mim1] [TssD]
ATGCCGATTTATCTTCAGATCGACGGTATCCAGGGTGATGCGACCCACGAGCAGCATCGCAAGTGGATGGACATCGAAGC
CATCCACTGGAACGTATCCCGCAACATGAACACCTCCGCTGGTTCTGCGGCCAACCGCGAAGCTTCCGAGCCGACCGTTT
CGGAAGTGATCCTCACCAAGGTCAGCGATTCCTCGTCGACCAAGCTCTTCCAGGAGGCCTGCTCCGGCCGCACCGGCAAG
CGCTCCGTCATCCATCTCGTCACCACGGGCAATCCCGGCGACACCTATATCGAGTACTCGCTCGAGAACACGCTGATCGC
CAGCTACTCGATCGATTCCAACGGCGACCGCCCGGTCGAGACGATCAAGCTGAACTTCACCAAGATGGAAGTGAAGTACA
CGCCTTACGACGACAAGCACTCGCCGCAGTCGCCGATGATCGCGTCTTACGATCTCGCCACCACCAAGGCCGCTTAA
ATGCCGATTTATCTTCAGATCGACGGTATCCAGGGTGATGCGACCCACGAGCAGCATCGCAAGTGGATGGACATCGAAGC
CATCCACTGGAACGTATCCCGCAACATGAACACCTCCGCTGGTTCTGCGGCCAACCGCGAAGCTTCCGAGCCGACCGTTT
CGGAAGTGATCCTCACCAAGGTCAGCGATTCCTCGTCGACCAAGCTCTTCCAGGAGGCCTGCTCCGGCCGCACCGGCAAG
CGCTCCGTCATCCATCTCGTCACCACGGGCAATCCCGGCGACACCTATATCGAGTACTCGCTCGAGAACACGCTGATCGC
CAGCTACTCGATCGATTCCAACGGCGACCGCCCGGTCGAGACGATCAAGCTGAACTTCACCAAGATGGAAGTGAAGTACA
CGCCTTACGACGACAAGCACTCGCCGCAGTCGCCGATGATCGCGTCTTACGATCTCGCCACCACCAAGGCCGCTTAA