Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00061  |
| T6SS type | Type i4b |
| Strain | Acinetobacter sp. ADP1 |
| Replicon (RefSeq) | chromosome (NC_005966) |
| Location | 2633143..2661510 |
| Function | effector translocation |
| Comment | - |
| References | [1] Weber BS et al (2013) Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] [2] Shneider MM et al (2013) PAAR-repeat proteins sharpen and diversify the type VI secretion system spike. Nature. 500(7462):350-3. [PudMed:23925114] [3] Basler M et al (2013) Tit-for-Tat: Type VI Secretion System Counterattack during Bacterial Cell-Cell Interactions. Cell. 152(4):884-94. [PudMed:23415234] [4] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| ACIAD_RS12160 | 2628937..2629467 | - | 531 | WP_026056971.1 | flavin reductase family protein | ||
| ACIAD_RS12165 | 2629502..2630740 | - | 1239 | WP_004928964.1 | hypothetical protein | ||
| ACIAD_RS12170 | 2630795..2631586 | - | 792 | WP_004928967.1 | SDR family oxidoreductase | ||
| ACIAD_RS12175 | 2631616..2632863 | - | 1248 | WP_004928970.1 | dienelactone hydrolase family protein | ||
| ACIAD_RS12180 | 2633143..2634144 | - | 1002 | WP_004928972.1 | AraC family transcriptional regulator | ||
| ACIAD_RS12185 | 2634401..2635675 | - | 1275 | WP_171056930.1 | Glu/Leu/Phe/Val dehydrogenase | ||
| T6CP011380 | PAAR | ACIAD_RS12190 | 2635901..2636167 | - | 267 | WP_004928977.1 | PAAR domain-containing protein |
| T6CP011379 | TagL | ACIAD_RS12195 | 2636197..2636961 | - | 765 | WP_004928979.1 | OmpA family protein |
| ACIAD_RS12200 (tagF) | 2636964..2637923 | - | 960 | WP_004928987.1 | type VI secretion system-associated protein TagF | ||
| T6CP000520 | TssM | ACIAD_RS12205 (tssM) | 2637964..2641785 | - | 3822 | WP_004928993.1 | type VI secretion system membrane subunit TssM |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01469 | ACIAD_RS00270 | Tpe | IMU00293 | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 55985..56617 (+) | 50083347 |
| EFF01470 | ACIAD_RS00785 | Tae | IMU00294 | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 170197..172380 (+) | 50083453 |
| EFF01472 | ACIAD_RS15495 | Tle | IMU00295 | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 3339596..3341326 (-) | 50086393 |
| EFF01471 | ACIAD_RS14065 | Tse | IMU00296 ; IMU00297 | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 3040392..3043397 (-) | 50086118 |
| EFF01801 | ACIAD_RS08260 | Tse | IMU00298 ; IMU00299 | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 1798278..1799639 (+) | 491065245 |
| EFF01802 | ACIAD_RS08265 | Tse | - | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 1799607..1800766 (-) | 1268821373 |
| EFF01803 | ACIAD_RS08275 | Tse | - | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 1800850..1802439 (+) | 491065249 |
| EFF00077 | ACIAD_RS12230 | - | - | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 2646545..2647048 (-) | 50085755 |
Showing 1 to 8 of 8 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Showing 1 to 7 of 7 rows
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| ACP00017 | ACIAD_RS12210 | chaperone | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 2641820..2643223 (-) | WP_004928997.1 | - | - |
| ACP00018 | ACIAD_RS12275 | chaperone | Acinetobacter baylyi ADP1 | chromosome (NC_005966) | 2656730..2657683 (+) | WP_026056969.1 | - | peptidoglycan |
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