Detailed information of effector
Summary
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ACIAD_RS12230 |
| Coordinates (Strand) | 2646545..2647048 (-) |
| NCBI ID | 50085755 |
| RefSeq | NC_005966 |
| Uniprot ID | UPI00003B7B6A |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 9e-40 | 5..139 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSNNTASYAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9848 | - | - |
Protein sequence: 168 a.a. .
>EFF00077 NC_005966:c2647048-2646545 (Unknown) [Acinetobacter baylyi ADP1]
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSN
NTASYAA*
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSN
NTASYAA*
Nucleotide sequence: 504 bp .
>EFF00077 NC_005966:c2647048-2646545 (Unknown) [Acinetobacter baylyi ADP1]
ATGAAAGATATATACGTTCAATTTCGAGGTAAATATAAGGTTGATGGTGAGTCACGTGATTCTGAGCACAAAGACTGGCT
TGAAGTCAACTCGTGGTCGCATAATATTCGCCAGCCAAAATCTGCAACTTCAAGTAGCGTAGGTGGTCACACTGCTGAAC
GTGTTGAGCATTCAGATATGCTTTTTGTTAAAGATTTGGATGCAACCAGCCCTAAACTGTGGGAAGCATGCTCTGCAGGT
TATACCTTTGATGAAGTACAGATCGATTTTTATCGTGCCAATGGTGATAAACGTATCAAGTACCTTCAAATCAAACTCAA
ACATGTTTTAGTTTCAAGTGTAACTCCGACTGTAAATGAAGAGGGTGTACCTACTGAAGTGTTTGGTTTGAAATATGCTG
CAGTTGAGTGGACTTATAACCAGCAAGACATTAACGGTTCTGCTAAAGGTGCTGTGACTAAAAAATGGTCTCTTTCAAAT
AACACTGCATCTTACGCTGCGTAA
ATGAAAGATATATACGTTCAATTTCGAGGTAAATATAAGGTTGATGGTGAGTCACGTGATTCTGAGCACAAAGACTGGCT
TGAAGTCAACTCGTGGTCGCATAATATTCGCCAGCCAAAATCTGCAACTTCAAGTAGCGTAGGTGGTCACACTGCTGAAC
GTGTTGAGCATTCAGATATGCTTTTTGTTAAAGATTTGGATGCAACCAGCCCTAAACTGTGGGAAGCATGCTCTGCAGGT
TATACCTTTGATGAAGTACAGATCGATTTTTATCGTGCCAATGGTGATAAACGTATCAAGTACCTTCAAATCAAACTCAA
ACATGTTTTAGTTTCAAGTGTAACTCCGACTGTAAATGAAGAGGGTGTACCTACTGAAGTGTTTGGTTTGAAATATGCTG
CAGTTGAGTGGACTTATAACCAGCAAGACATTAACGGTTCTGCTAAAGGTGCTGTGACTAAAAAATGGTCTCTTTCAAAT
AACACTGCATCTTACGCTGCGTAA