Detailed information of effector


Summary

Effector ID EFF01802 experimental
Effector type Tse
Cognate immunity protein -
Related T6SS (Type) T6SS00061 experimental (Type i4b)
Strain Acinetobacter baylyi ADP1
Replicon chromosome
Sequence Protein sequence (387 a.a.); Nucleotide sequence (1160 bp)
Description Tse
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) ACIAD_RS08265
Coordinates (Strand) 1799607..1800766 (-)
NCBI ID 1268821373
RefSeq NC_005966
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
rvePF00665.283.1e-26213..311
rve_2PF13333.81.2e-13318..372
HTH_Tnp_1PF01527.224.7e-103..77
HTH_21PF13276.83.9e-07139..189
Showing 1 to 4 of 4 rows
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-386MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVGSSKRQLSPEQQRILELEKEVKQLREANDNLKKSACVLSDRSCQEKYTVIQDLDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARLGAPSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPTAPNLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQTSHRIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNCVQSMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEIYYNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9948--


  Protein sequence: 387 a.a.    .

>EFF01802 NC_005966:c1800766-1799607 [Acinetobacter]
MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVGSSKRQLSPEQQRILELEKEV
KQLREANDNLKKSACVLSDRSCQEKYTVIQDLDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDL
KAVYWQHHARLGAPSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPTAPNLLDRQF
TVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQTSHRIDRQLVCDAFHYAMARQGYPMGVMVH
SDQGSQYCSRDFRALLLTNNCVQSMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEI
YYNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV*

  Nucleotide sequence: 1160 bp    .

>EFF01802 NC_005966:c1800766-1799607 [Acinetobacter]
ATGGCCAAACGTTTTAGTCCTGAATTTAAACAGCAAGCAATTGATTATGCACTTTCAAACTCACACGAGC
CTATAGCTACAATCGCCCAGAAATTAGGTGTGGGTTATTCAACTTTAGACAAATGGATTCGTGAAGCCAA
TCCAGTGGGTTCAAGCAAACGTCAACTTTCACCAGAACAACAGCGGATCTTGGAATTAGAGAAAGAAGTC
AAACAGCTCAGGGAAGCCAATGACATCTTAAAAAAAGCGCATGTGTACTTTCTGACAGATCATGCCAAGA
AAAGTACACGGTAATTCAAGATCTGGATGTGAATGAAGTCACTGTATCTTCTGCCTGTAAATGCCTGGGT
GTCAGCACTTCAGGCTATTATGCCTGGCGAAAACGCCAGACCAATCTAGCGCAGAAATATAATGATTTAA
AAGCCGTGTATTGGCAGCATCATGCACGATTGGGTGCACCTTCATTGGTACATGACATGCATGATTTAGG
TTACAGCATGAGCGAACGAACCGTTGGAAGAATGCTTAAAAAACTTGGTTTACGGAGCAAAATTGCACGT
AAATACAAGCATACGACTGATTCAAACCATCGTTTGCCTACAGCGCCTAACTTGTTGGATCGTCAATTTA
CGGTCAATGAACCCAATAAGATCTGGACAACGGATATTACCTATATCCGTACTAAGCAAGGTTGGCTGTA
TTTATGTGTGATGCTGGATCTATTCAGCCGTCGTATTGTCGGTTGGCAAACCAGCCATCGAATAGACCGT
CAATTGGTGTGTGATGCGTTTCATTATGCAATGGCTCGTCAGGGGTATCCAATGGGTGTCATGGTACATT
CGGACCAAGGCTCACAGTACTGTAGTCGTGATTTTAGGGCGCTATTATTGACGAATAACTGCGTTCAAAG
TATGTCACGCAGGGGAAACTGTTGGGATAATGCAGTGACCGAAAGCTTCTTTCATACATTGAAAGGTCAT
ATGGTCCATGGCAGTGTGTTTGCCACTCGAAAAGAAGCGAATGCTGTCTTGTTTGACTATATTGAGATTT
ATTACAATCGAATCAGACGACATTCTACAAACGGCTGGTTAAGCCCAGAAGCCTTTGAACAGAAATATTT
CAAGAATTTAGAGGGATTTGTTGTCCACGATACTGTCTAG