Detailed information of effector


Summary

Effector ID EFF01803 experimental
Effector type Tse
Cognate immunity protein -
Related T6SS (Type) T6SS00061 experimental (Type i4b)
Strain Acinetobacter baylyi ADP1
Replicon chromosome
Sequence Protein sequence (530 a.a.); Nucleotide sequence (1590 bp)
Description Tse
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) ACIAD_RS08275
Coordinates (Strand) 1800850..1802439 (+)
NCBI ID 491065249
RefSeq NC_005966
Uniprot ID UPI0002D01811
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Inside1-336MEDWLEAQAQKILSYGKTEIEPIIKFYIEWLKSDTLLNYMENAFDHKSPFSASNFITINSRIVGNADTLELCSKYFAELLQEANYSNRKNYLLRTFIFDSKSLQDTVNSVNDFLGKNQITTLAFAGTQFFDESSITQHDNYKEQVKTIKESIKVKIDIFSEQIGGTVARVFHGRANQTPDAAKTVAMKSFEVFSGKTLTTKAYAGKLTDIIQQIMRDSPINFDEAESRQAKKNAKNAFKVNLKKALLENFNTDIDFHRLGKMRTKVYMVLHLDTQQLAKINPNMTQAQISEAMHGAVRGSGQVVADNKVAGALEQSRQLNQLEGQSQKVFARQGTG
Transmembrane helix337-359FGFGVFAFGLQSLALISATQGVA
Outside360-363TGVN
Transmembrane helix364-382VQTGMNFVGVIAATLGNVA
Inside383-407DVMDRQLHMKIAQIGETAKLTFLKG
Transmembrane helix408-430WAKRIAIGGLYGGAILLAAVEVL
Outside431-439KGNDALKKD
Transmembrane helix440-462QYFIMASYYVNAVVIFFTTRAFI
Inside463-468NSSTML
Transmembrane helix469-491LGLRGGYWGLILIGVSIVISYGI
Outside492-529DLLKEREIRNFLEASGWGTKSENWTQALEKTEFEKIYE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9957--


  Protein sequence: 530 a.a.    .

>EFF01803 NC_005966:1800850-1802439 Type VI Secretion System Effector (Tse) [Acinetobacter baylyi ADP1]
MEDWLEAQAQKILSYGKTEIEPIIKFYIEWLKSDTLLNYMENAFDHKSPFSASNFITINSRIVGNADTLELCSKYFAELL
QEANYSNRKNYLLRTFIFDSKSLQDTVNSVNDFLGKNQITTLAFAGTQFFDESSITQHDNYKEQVKTIKESIKVKIDIFS
EQIGGTVARVFHGRANQTPDAAKTVAMKSFEVFSGKTLTTKAYAGKLTDIIQQIMRDSPINFDEAESRQAKKNAKNAFKV
NLKKALLENFNTDIDFHRLGKMRTKVYMVLHLDTQQLAKINPNMTQAQISEAMHGAVRGSGQVVADNKVAGALEQSRQLN
QLEGQSQKVFARQGTGFGFGVFAFGLQSLALISATQGVATGVNVQTGMNFVGVIAATLGNVADVMDRQLHMKIAQIGETA
KLTFLKGWAKRIAIGGLYGGAILLAAVEVLKGNDALKKDQYFIMASYYVNAVVIFFTTRAFINSSTMLLGLRGGYWGLIL
IGVSIVISYGIDLLKEREIRNFLEASGWGTKSENWTQALEKTEFEKIYE*

  Nucleotide sequence: 1590 bp    .

>EFF01803 NC_005966:1800850-1802439 Type VI Secretion System Effector (Tse) [Acinetobacter baylyi ADP1]
ATGGAGGATTGGCTAGAGGCGCAAGCACAAAAGATACTCAGCTATGGTAAAACAGAAATTGAGCCAATCATCAAATTTTA
TATTGAGTGGCTTAAGTCAGATACTTTATTGAACTACATGGAGAATGCTTTTGATCATAAAAGTCCATTTTCTGCGAGTA
ATTTTATAACGATTAACTCCCGAATTGTTGGTAATGCGGATACCCTAGAACTATGTTCGAAATATTTTGCAGAGTTGTTA
CAGGAGGCGAATTATAGCAATCGGAAGAATTATCTGCTGAGAACTTTTATCTTTGATTCTAAATCTTTGCAGGATACCGT
GAACTCGGTGAATGATTTTTTAGGTAAAAATCAGATCACGACTTTAGCATTTGCCGGAACACAATTTTTTGATGAGAGTA
GTATTACGCAGCATGACAATTATAAAGAACAAGTTAAAACGATTAAAGAAAGCATTAAAGTAAAAATTGATATTTTTTCC
GAACAAATCGGTGGCACAGTGGCACGTGTATTTCATGGGCGTGCTAATCAAACCCCAGATGCCGCCAAAACAGTGGCAAT
GAAAAGCTTTGAGGTGTTTTCTGGGAAAACATTAACAACAAAAGCATATGCCGGAAAGTTAACCGATATTATTCAGCAAA
TTATGCGCGATTCGCCTATTAACTTTGATGAGGCTGAATCTCGACAAGCCAAGAAAAACGCTAAAAATGCCTTTAAAGTT
AATTTAAAAAAAGCATTACTGGAAAATTTTAATACAGACATAGATTTTCACCGTTTAGGAAAAATGCGGACCAAAGTTTA
TATGGTCTTGCATCTGGATACTCAACAGTTAGCCAAGATTAATCCCAATATGACTCAGGCTCAAATCAGTGAAGCCATGC
ATGGAGCAGTGCGAGGTTCTGGACAAGTTGTAGCAGATAATAAAGTTGCTGGTGCTTTGGAGCAAAGTAGACAATTAAAC
CAGTTAGAGGGGCAAAGCCAAAAAGTTTTTGCTCGGCAAGGTACGGGTTTTGGTTTTGGTGTATTTGCGTTTGGTTTACA
GTCGTTGGCATTAATTAGTGCAACGCAAGGGGTGGCAACGGGTGTTAATGTACAAACAGGGATGAACTTTGTTGGGGTAA
TTGCGGCTACTCTAGGTAATGTTGCTGATGTGATGGATCGACAATTACACATGAAGATAGCGCAGATTGGGGAAACGGCT
AAATTAACTTTTTTAAAAGGTTGGGCTAAGAGAATTGCTATAGGTGGTTTGTATGGAGGGGCAATACTTTTAGCTGCTGT
TGAGGTACTGAAAGGAAATGATGCATTAAAGAAAGATCAATACTTCATTATGGCGTCATATTATGTAAATGCTGTTGTGA
TTTTTTTCACAACTCGTGCTTTTATTAATAGTAGTACCATGCTTCTGGGTTTACGTGGCGGTTATTGGGGGTTAATTTTA
ATTGGTGTTTCGATTGTTATTAGTTATGGCATTGACCTGTTGAAAGAAAGAGAAATACGTAATTTTCTGGAAGCATCAGG
ATGGGGAACAAAGAGTGAAAATTGGACCCAAGCCCTCGAAAAAACTGAATTTGAAAAGATTTACGAGTAA