Detailed information of accessory protein
Summary
| Accessory protein ID | ACP00018  |
| Type | chaperone |
| Related T6SS (Type) | T6SS00061 (Type i4b) |
| Strain | Acinetobacter baylyi ADP1 |
| Replicon | chromosome |
| Related structure protein | - |
| Related effector | peptidoglycan |
| Description | - |
| Reference | [1] Ringel PD, Hu D, Basler M. The Role of Type VI Secretion System Effectors in Target Cell Lysis and Subsequent Horizontal Gene Transfer. Cell Rep. 2017 Dec 26;21(13):3927-3940. doi: 10.1016/j.celrep.2017.12.020. PMID: 29281838 |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ACIAD_RS12275 |
| Coordinates (Strand) | 2656730..2657683 (+) |
| NCBI ID | WP_026056969.1 |
| RefSeq | NC_005966 |
| Uniprot ID | UPI0004749939 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Peptidase_M15_4 | PF13539.8 | 1.5e-14 | 225..290 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-1 | M |
| Transmembrane helix | 2-24 | IVLIFLCFIGVALILAFFMSYEF |
| Outside | 25-67 | RFKILDMFKALLPQSKQKLQHAKYFAKKMHQASASDQLQSHWH |
| Transmembrane helix | 68-90 | LQQWWILIAGFFLFGSVLVFAFT |
| Inside | 91-317 | RPISSTKIEAEYLKEVDPQIYTLLNGEMLTPPPEVDESLISAAIVEANQLEQQYASQHSETNAPSASENLMHHNLIDTQFVDRKWDKMNPRYKQRLLMVFKIMKERYGYELVLLEGYRSPERQNLLSGNPNTTRARGYQSYHQFGLAADVAFKRNGKVVISERDPWAMRGYQLYGEVAESVGLTWGGRWKSIQDYGHTEYRMPGLRKTKEMAEQLIAEGQLTANAAS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9953 | - | - |
Protein sequence: 318 a.a.
>ACP00018 NC_005966:2656730-2657683 [Acinetobacter baylyi ADP1]
MIVLIFLCFIGVALILAFFMSYEFRFKILDMFKALLPQSKQKLQHAKYFAKKMHQASASDQLQSHWHLQQWWILIAGFFL
FGSVLVFAFTRPISSTKIEAEYLKEVDPQIYTLLNGEMLTPPPEVDESLISAAIVEANQLEQQYASQHSETNAPSASENL
MHHNLIDTQFVDRKWDKMNPRYKQRLLMVFKIMKERYGYELVLLEGYRSPERQNLLSGNPNTTRARGYQSYHQFGLAADV
AFKRNGKVVISERDPWAMRGYQLYGEVAESVGLTWGGRWKSIQDYGHTEYRMPGLRKTKEMAEQLIAEGQLTANAAS*
MIVLIFLCFIGVALILAFFMSYEFRFKILDMFKALLPQSKQKLQHAKYFAKKMHQASASDQLQSHWHLQQWWILIAGFFL
FGSVLVFAFTRPISSTKIEAEYLKEVDPQIYTLLNGEMLTPPPEVDESLISAAIVEANQLEQQYASQHSETNAPSASENL
MHHNLIDTQFVDRKWDKMNPRYKQRLLMVFKIMKERYGYELVLLEGYRSPERQNLLSGNPNTTRARGYQSYHQFGLAADV
AFKRNGKVVISERDPWAMRGYQLYGEVAESVGLTWGGRWKSIQDYGHTEYRMPGLRKTKEMAEQLIAEGQLTANAAS*
Nucleotide sequence: 954 bp
>ACP00018 NC_005966:2656730-2657683 [Acinetobacter baylyi ADP1]
ATGATAGTGCTGATCTTTTTGTGCTTTATTGGGGTTGCCCTTATCCTTGCTTTTTTCATGTCTTATGAATTTAGGTTCAA
AATACTGGATATGTTTAAAGCGCTACTTCCTCAGAGTAAACAAAAACTTCAGCACGCAAAATATTTTGCAAAAAAAATGC
ATCAGGCCTCTGCCTCGGATCAATTACAATCACACTGGCATTTGCAGCAATGGTGGATTTTAATTGCGGGTTTTTTTCTT
TTTGGAAGTGTACTGGTGTTTGCGTTTACTCGACCGATTAGTTCCACCAAAATCGAAGCAGAGTATTTAAAAGAAGTTGA
TCCACAAATTTATACTTTACTCAATGGTGAAATGCTCACGCCTCCGCCTGAAGTCGATGAATCGTTAATTAGTGCTGCAA
TTGTAGAAGCCAATCAACTTGAACAACAATATGCAAGCCAGCACAGTGAAACAAATGCCCCATCTGCATCTGAAAATTTG
ATGCATCATAATTTGATAGATACCCAATTTGTTGACCGTAAATGGGACAAAATGAATCCGCGCTATAAGCAACGTCTGTT
AATGGTCTTTAAAATAATGAAAGAACGCTATGGGTATGAGCTGGTTCTACTGGAGGGTTATCGAAGTCCTGAACGTCAAA
ATTTACTCTCAGGTAATCCAAATACCACACGCGCTAGAGGTTATCAAAGCTATCATCAATTTGGTCTTGCCGCAGATGTT
GCGTTTAAACGCAATGGTAAGGTTGTCATTTCTGAAAGAGACCCCTGGGCAATGCGAGGCTATCAACTCTATGGAGAAGT
TGCAGAATCTGTAGGTCTAACTTGGGGTGGCCGCTGGAAATCAATTCAGGACTATGGACACACCGAATACCGTATGCCAG
GCTTGAGAAAAACCAAGGAAATGGCTGAGCAGTTAATTGCAGAAGGCCAATTAACTGCCAATGCAGCCAGTTGA
ATGATAGTGCTGATCTTTTTGTGCTTTATTGGGGTTGCCCTTATCCTTGCTTTTTTCATGTCTTATGAATTTAGGTTCAA
AATACTGGATATGTTTAAAGCGCTACTTCCTCAGAGTAAACAAAAACTTCAGCACGCAAAATATTTTGCAAAAAAAATGC
ATCAGGCCTCTGCCTCGGATCAATTACAATCACACTGGCATTTGCAGCAATGGTGGATTTTAATTGCGGGTTTTTTTCTT
TTTGGAAGTGTACTGGTGTTTGCGTTTACTCGACCGATTAGTTCCACCAAAATCGAAGCAGAGTATTTAAAAGAAGTTGA
TCCACAAATTTATACTTTACTCAATGGTGAAATGCTCACGCCTCCGCCTGAAGTCGATGAATCGTTAATTAGTGCTGCAA
TTGTAGAAGCCAATCAACTTGAACAACAATATGCAAGCCAGCACAGTGAAACAAATGCCCCATCTGCATCTGAAAATTTG
ATGCATCATAATTTGATAGATACCCAATTTGTTGACCGTAAATGGGACAAAATGAATCCGCGCTATAAGCAACGTCTGTT
AATGGTCTTTAAAATAATGAAAGAACGCTATGGGTATGAGCTGGTTCTACTGGAGGGTTATCGAAGTCCTGAACGTCAAA
ATTTACTCTCAGGTAATCCAAATACCACACGCGCTAGAGGTTATCAAAGCTATCATCAATTTGGTCTTGCCGCAGATGTT
GCGTTTAAACGCAATGGTAAGGTTGTCATTTCTGAAAGAGACCCCTGGGCAATGCGAGGCTATCAACTCTATGGAGAAGT
TGCAGAATCTGTAGGTCTAACTTGGGGTGGCCGCTGGAAATCAATTCAGGACTATGGACACACCGAATACCGTATGCCAG
GCTTGAGAAAAACCAAGGAAATGGCTGAGCAGTTAATTGCAGAAGGCCAATTAACTGCCAATGCAGCCAGTTGA