Detailed information of accessory protein


Summary

Accessory protein ID ACP00018 experimental
Type chaperone
Related T6SS (Type) T6SS00061 (Type i4b)
Strain Acinetobacter baylyi ADP1
Replicon chromosome
Related structure protein -
Related effector peptidoglycan
Description -
Reference [1] Ringel PD, Hu D, Basler M. The Role of Type VI Secretion System Effectors in Target Cell Lysis and Subsequent Horizontal Gene Transfer. Cell Rep. 2017 Dec 26;21(13):3927-3940. doi: 10.1016/j.celrep.2017.12.020. PMID: 29281838
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) ACIAD_RS12275
Coordinates (Strand) 2656730..2657683 (+)
NCBI ID WP_026056969.1
RefSeq NC_005966
Uniprot ID UPI0004749939
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
Peptidase_M15_4PF13539.81.5e-14225..290
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Inside1-1M
Transmembrane helix2-24IVLIFLCFIGVALILAFFMSYEF
Outside25-67RFKILDMFKALLPQSKQKLQHAKYFAKKMHQASASDQLQSHWH
Transmembrane helix68-90LQQWWILIAGFFLFGSVLVFAFT
Inside91-317RPISSTKIEAEYLKEVDPQIYTLLNGEMLTPPPEVDESLISAAIVEANQLEQQYASQHSETNAPSASENLMHHNLIDTQFVDRKWDKMNPRYKQRLLMVFKIMKERYGYELVLLEGYRSPERQNLLSGNPNTTRARGYQSYHQFGLAADVAFKRNGKVVISERDPWAMRGYQLYGEVAESVGLTWGGRWKSIQDYGHTEYRMPGLRKTKEMAEQLIAEGQLTANAAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9953--


  Protein sequence: 318 a.a.    

>ACP00018 NC_005966:2656730-2657683 [Acinetobacter baylyi ADP1]
MIVLIFLCFIGVALILAFFMSYEFRFKILDMFKALLPQSKQKLQHAKYFAKKMHQASASDQLQSHWHLQQWWILIAGFFL
FGSVLVFAFTRPISSTKIEAEYLKEVDPQIYTLLNGEMLTPPPEVDESLISAAIVEANQLEQQYASQHSETNAPSASENL
MHHNLIDTQFVDRKWDKMNPRYKQRLLMVFKIMKERYGYELVLLEGYRSPERQNLLSGNPNTTRARGYQSYHQFGLAADV
AFKRNGKVVISERDPWAMRGYQLYGEVAESVGLTWGGRWKSIQDYGHTEYRMPGLRKTKEMAEQLIAEGQLTANAAS*

  Nucleotide sequence: 954 bp    

>ACP00018 NC_005966:2656730-2657683 [Acinetobacter baylyi ADP1]
ATGATAGTGCTGATCTTTTTGTGCTTTATTGGGGTTGCCCTTATCCTTGCTTTTTTCATGTCTTATGAATTTAGGTTCAA
AATACTGGATATGTTTAAAGCGCTACTTCCTCAGAGTAAACAAAAACTTCAGCACGCAAAATATTTTGCAAAAAAAATGC
ATCAGGCCTCTGCCTCGGATCAATTACAATCACACTGGCATTTGCAGCAATGGTGGATTTTAATTGCGGGTTTTTTTCTT
TTTGGAAGTGTACTGGTGTTTGCGTTTACTCGACCGATTAGTTCCACCAAAATCGAAGCAGAGTATTTAAAAGAAGTTGA
TCCACAAATTTATACTTTACTCAATGGTGAAATGCTCACGCCTCCGCCTGAAGTCGATGAATCGTTAATTAGTGCTGCAA
TTGTAGAAGCCAATCAACTTGAACAACAATATGCAAGCCAGCACAGTGAAACAAATGCCCCATCTGCATCTGAAAATTTG
ATGCATCATAATTTGATAGATACCCAATTTGTTGACCGTAAATGGGACAAAATGAATCCGCGCTATAAGCAACGTCTGTT
AATGGTCTTTAAAATAATGAAAGAACGCTATGGGTATGAGCTGGTTCTACTGGAGGGTTATCGAAGTCCTGAACGTCAAA
ATTTACTCTCAGGTAATCCAAATACCACACGCGCTAGAGGTTATCAAAGCTATCATCAATTTGGTCTTGCCGCAGATGTT
GCGTTTAAACGCAATGGTAAGGTTGTCATTTCTGAAAGAGACCCCTGGGCAATGCGAGGCTATCAACTCTATGGAGAAGT
TGCAGAATCTGTAGGTCTAACTTGGGGTGGCCGCTGGAAATCAATTCAGGACTATGGACACACCGAATACCGTATGCCAG
GCTTGAGAAAAACCAAGGAAATGGCTGAGCAGTTAATTGCAGAAGGCCAATTAACTGCCAATGCAGCCAGTTGA