Detailed information of component protein


Summary

Component ID T6CP011379
Component protein type TagL
T6SS ID (Type) T6SS00061 experimental (Type i4b)
Strain Acinetobacter sp. ADP1
Replicon chromosome
Sequence Protein sequence (255 a.a.); Nucleotide sequence (765 bp)
Reference
[1] Basler M, Ho BT, Mekalanos JJ. Tit-for-tat: type VI secretion system counterattack during bacterial cell-cell interactions. Cell. 2013 Feb 14;152(4):884-94. doi: 10.1016/j.cell.2013.01.042. PMID: 23415234
[2] Weber BS, Miyata ST, Iwashkiw JA, et al. Genomic and functional analysis of the type VI secretion system in Acinetobacter. PLoS One. 2013;8(1):e55142. doi: 10.1371/journal.pone.0055142. Epub 2013 Jan 24. PMID: 23365692
[3] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603
[4] Shneider MM, Buth SA, Ho BT, et al. PAAR-repeat proteins sharpen and diversify the type VI secretion system spike. Nature. 2013 Aug 15;500(7462):350-353. doi: 10.1038/nature12453. Epub 2013 Aug 7. PMID: 23925114
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACIAD_RS12195
Coordinate (Strand) 2636197..2636961 (-)
NCBI ID WP_004928979.1
RefSeq NC_005966
Uniprot ID Q6F929_ACIAD
KEGG ID aci:ACIAD2682
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 1e-24 153..247
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MKTRHATQLKLC
Transmembrane helix 13-35 IFVSGWLSLTSVFAQPIIVEGVV
Outside 36-254 PNEASKQAILQKMQAVYGADQVVDKVQVRPVSAPYGWSDSVTQVISPDLKKVKQGKLTVRGTQVELTGKMSNPNDIQPTISQFQSLVQPPYRFNSQLTINQAEQKIVDDALKNRIIEFESGSAILTASGQQILDEMAAALKKVGGKKVKIIGHTDSSGDASKNLVLSQERAVAVKNYLITKNISSDNLSTEGVGSNKPVADNTTAEGRRKNRRIEFEVL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9941 pos: 26-27. VFA-QP. MKTRHATQLKLCIFVSGWLSLTSVFA


  Protein sequence: 255 a.a.    

>T6CP011379 NC_005966:c2636961-2636197 [Acinetobacter baylyi ADP1] [TagL]
MKTRHATQLKLCIFVSGWLSLTSVFAQPIIVEGVVPNEASKQAILQKMQAVYGADQVVDKVQVRPVSAPYGWSDSVTQVI
SPDLKKVKQGKLTVRGTQVELTGKMSNPNDIQPTISQFQSLVQPPYRFNSQLTINQAEQKIVDDALKNRIIEFESGSAIL
TASGQQILDEMAAALKKVGGKKVKIIGHTDSSGDASKNLVLSQERAVAVKNYLITKNISSDNLSTEGVGSNKPVADNTTA
EGRRKNRRIEFEVL*

  Nucleotide sequence: 765 bp    

>T6CP011379 NC_005966:c2636961-2636197 [Acinetobacter baylyi ADP1] [TagL]
ATGAAAACTAGACATGCGACACAATTAAAATTATGCATATTCGTAAGTGGTTGGTTATCACTGACATCTGTATTTGCTCA
GCCGATCATTGTTGAGGGGGTGGTTCCAAATGAAGCATCCAAACAAGCGATTCTACAAAAAATGCAGGCGGTATATGGTG
CAGACCAAGTCGTTGATAAAGTACAGGTGCGTCCTGTATCTGCACCTTATGGCTGGAGTGACTCTGTAACGCAAGTGATT
AGTCCTGATTTGAAAAAAGTCAAACAAGGCAAACTTACGGTACGTGGAACACAAGTTGAATTAACTGGAAAAATGAGTAA
TCCGAATGATATTCAACCGACTATCAGTCAATTTCAGTCACTGGTTCAGCCTCCTTATCGCTTTAATTCTCAGCTTACAA
TCAATCAGGCTGAACAAAAGATTGTTGATGATGCACTAAAAAATCGGATTATTGAGTTTGAATCTGGTAGCGCAATTCTC
ACTGCATCAGGCCAGCAGATCCTGGATGAAATGGCAGCCGCTTTGAAGAAAGTGGGGGGCAAGAAAGTTAAAATCATTGG
GCATACTGACAGTTCAGGAGATGCCTCGAAAAACTTGGTACTCAGCCAGGAACGTGCAGTGGCTGTAAAAAATTATCTGA
TCACTAAAAATATATCTTCAGATAATCTAAGCACGGAAGGTGTAGGTTCAAATAAGCCTGTTGCAGACAATACAACAGCA
GAAGGGCGCCGTAAAAATCGACGAATCGAATTTGAAGTCCTATAA