Detailed information of effector
Summary
| Effector ID | EFF01469  |
| Effector type | Tpe |
| Cognate immunity protein | IMU00293 |
| Related T6SS (Type) | T6SS00061 (Type i4b) |
| Strain | Acinetobacter baylyi ADP1 |
| Replicon | chromosome |
| Sequence | Protein sequence (211 a.a.); Nucleotide sequence (633 bp) |
| Description | Tpe1 (ACIAD0053),is predicted to contain a zinc metallopeptidase active site, PS00142. |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ACIAD_RS00270 |
| Coordinates (Strand) | 55985..56617 (+) |
| NCBI ID | 50083347 |
| RefSeq | NC_005966 |
| Uniprot ID | UPI00003B7269 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-210 | MGLNIIENNLDKIITNNKNDSLAKLKLRTRLLTLGEIELCRLVYKNSIDYSRVTIIEGSFFPLDLQNEDTFVTPNGHIFIPTKHFLLDYSTASLSYKHLFIHEMGHVWQHQRKNNVLINAGIAQACTIFKDPYKYNIHGADTVADYVKYKNTKKFVNYNLESQAEIFADYWALKTNNIHVISKKNISNIDKSNLDTTLAIYEEKISEVIK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9982 | - | - |
Protein sequence: 211 a.a. .
>EFF01469 NC_005966:55985-56617 Type VI Peptidase Effector (Tpe) [Acinetobacter baylyi ADP1]
MGLNIIENNLDKIITNNKNDSLAKLKLRTRLLTLGEIELCRLVYKNSIDYSRVTIIEGSFFPLDLQNEDTFVTPNGHIFI
PTKHFLLDYSTASLSYKHLFIHEMGHVWQHQRKNNVLINAGIAQACTIFKDPYKYNIHGADTVADYVKYKNTKKFVNYNL
ESQAEIFADYWALKTNNIHVISKKNISNIDKSNLDTTLAIYEEKISEVIK*
MGLNIIENNLDKIITNNKNDSLAKLKLRTRLLTLGEIELCRLVYKNSIDYSRVTIIEGSFFPLDLQNEDTFVTPNGHIFI
PTKHFLLDYSTASLSYKHLFIHEMGHVWQHQRKNNVLINAGIAQACTIFKDPYKYNIHGADTVADYVKYKNTKKFVNYNL
ESQAEIFADYWALKTNNIHVISKKNISNIDKSNLDTTLAIYEEKISEVIK*
Nucleotide sequence: 633 bp .
>EFF01469 NC_005966:55985-56617 Type VI Peptidase Effector (Tpe) [Acinetobacter baylyi ADP1]
ATGGGATTAAATATTATTGAAAATAATTTAGATAAAATAATCACGAATAATAAAAATGATAGTTTAGCTAAGTTAAAGCT
AAGAACACGTTTATTAACACTGGGGGAAATTGAACTATGCAGATTAGTTTATAAAAATAGTATTGATTATTCTAGAGTTA
CTATTATAGAGGGAAGCTTTTTTCCATTGGATTTACAAAATGAAGATACTTTTGTTACTCCTAATGGACATATTTTCATT
CCAACTAAGCATTTTCTATTAGATTATAGTACTGCTAGTCTAAGCTATAAGCATCTATTTATTCATGAAATGGGGCATGT
TTGGCAACATCAAAGAAAAAACAATGTACTTATAAATGCTGGGATAGCACAAGCATGTACTATTTTTAAAGATCCATATA
AATATAATATTCATGGTGCAGATACTGTAGCTGATTATGTAAAATATAAGAATACCAAAAAGTTTGTTAATTATAATTTA
GAGTCCCAAGCAGAAATTTTTGCAGACTACTGGGCATTAAAAACCAATAATATTCATGTAATTAGCAAAAAAAACATATC
TAATATAGATAAAAGTAATTTAGATACCACACTGGCAATTTATGAAGAAAAAATAAGCGAAGTGATTAAGTAG
ATGGGATTAAATATTATTGAAAATAATTTAGATAAAATAATCACGAATAATAAAAATGATAGTTTAGCTAAGTTAAAGCT
AAGAACACGTTTATTAACACTGGGGGAAATTGAACTATGCAGATTAGTTTATAAAAATAGTATTGATTATTCTAGAGTTA
CTATTATAGAGGGAAGCTTTTTTCCATTGGATTTACAAAATGAAGATACTTTTGTTACTCCTAATGGACATATTTTCATT
CCAACTAAGCATTTTCTATTAGATTATAGTACTGCTAGTCTAAGCTATAAGCATCTATTTATTCATGAAATGGGGCATGT
TTGGCAACATCAAAGAAAAAACAATGTACTTATAAATGCTGGGATAGCACAAGCATGTACTATTTTTAAAGATCCATATA
AATATAATATTCATGGTGCAGATACTGTAGCTGATTATGTAAAATATAAGAATACCAAAAAGTTTGTTAATTATAATTTA
GAGTCCCAAGCAGAAATTTTTGCAGACTACTGGGCATTAAAAACCAATAATATTCATGTAATTAGCAAAAAAAACATATC
TAATATAGATAAAAGTAATTTAGATACCACACTGGCAATTTATGAAGAAAAAATAAGCGAAGTGATTAAGTAG