Detailed information of immunity protein


Summary

Immunity protein ID IMU00298 experimental
Cognate effector EFF01801 experimental
Related T6SS (Type) T6SS00061 experimental (Type i4b)
Strain Acinetobacter baylyi ADP1
Replicon chromosome
Sequence Protein sequence (363 a.a.); Nucleotide sequence (1089 bp)
Description Tsi1b
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) ACIAD1796 (Tsi1b)
Coordinates (Strand) 1803547..1804635 (+)
NCBI ID 50084944
RefSeq NC_005966
Uniprot ID UPI00003B784D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-73 MLREDYENKFTTLNQPFEIGTPNKNGRLRLREIDIKNLKTDQLYPHRQVIRFNSTFVEVMDSWEFIRGRATAL
Transmembrane helix 74-96 ALPMWAALFFAISMFLFAIYSLY
Outside 97-99 FKQ
Transmembrane helix 100-122 VYWSIAIISCLTIGLVYLVYSNY
Inside 123-270 KMAKYDLFGYTHYPIRFNRKTQKVYAFSPQQQKIIELNWQDLRFSAVQEGRFDIELRASLVNEDNIVEEEIIFPFITKIYGKELVDHHLAFFKAYMQGDDLKSIDAAIPEFFDVYNRKETFKESFERVYMQFDGEEIIQQTRPAERDN
Transmembrane helix 271-290 GIATVAFPLFSLILLRRLGV
Outside 291-334 YFSKIPQWPTHIEKECQIDSNDPYDSTGKQRHLSPLVFTSAEKL
Transmembrane helix 335-357 ILFLGWFLGTSIFIAFLAGLAYL
Inside 358-362 SWNYR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 363 a.a.    .

>IMU00298 NC_005966:1803547-1804635 [Acinetobacter baylyi ADP1]
MLREDYENKFTTLNQPFEIGTPNKNGRLRLREIDIKNLKTDQLYPHRQVIRFNSTFVEVMDSWEFIRGRATALALPMWAA
LFFAISMFLFAIYSLYFKQVYWSIAIISCLTIGLVYLVYSNYKMAKYDLFGYTHYPIRFNRKTQKVYAFSPQQQKIIELN
WQDLRFSAVQEGRFDIELRASLVNEDNIVEEEIIFPFITKIYGKELVDHHLAFFKAYMQGDDLKSIDAAIPEFFDVYNRK
ETFKESFERVYMQFDGEEIIQQTRPAERDNGIATVAFPLFSLILLRRLGVYFSKIPQWPTHIEKECQIDSNDPYDSTGKQ
RHLSPLVFTSAEKLILFLGWFLGTSIFIAFLAGLAYLSWNYR*

  Nucleotide sequence: 1089 bp    .

>IMU00298 NC_005966:1803547-1804635 [Acinetobacter baylyi ADP1]
ATGTTAAGAGAAGACTACGAAAACAAGTTTACGACACTCAATCAACCCTTTGAAATTGGGACTCCCAATAAAAACGGACG
TTTACGTTTAAGGGAGATTGATATAAAAAACCTGAAAACGGATCAGCTTTATCCCCATCGTCAGGTTATTCGTTTTAATT
CTACTTTTGTGGAGGTCATGGATAGCTGGGAGTTTATTCGTGGACGCGCAACAGCATTAGCACTTCCAATGTGGGCCGCA
TTATTTTTTGCGATTTCTATGTTTTTATTTGCTATATATAGCCTGTATTTTAAACAAGTTTATTGGAGTATCGCTATAAT
TTCGTGCCTAACGATTGGTTTGGTTTATTTAGTCTATTCGAATTATAAGATGGCAAAGTATGATTTATTTGGCTATACGC
ATTACCCAATCCGTTTTAACCGTAAGACCCAGAAAGTATATGCTTTTTCACCTCAACAACAAAAAATCATTGAGCTAAAC
TGGCAGGATTTACGTTTTTCTGCTGTACAAGAAGGACGGTTTGATATCGAGTTAAGAGCAAGTTTAGTAAATGAGGATAA
TATTGTAGAAGAAGAAATAATTTTTCCTTTTATTACAAAAATATATGGAAAAGAATTGGTCGATCACCATTTGGCATTCT
TTAAAGCTTATATGCAAGGCGATGATCTAAAAAGTATAGATGCGGCTATTCCAGAGTTTTTTGATGTTTATAACAGGAAA
GAAACTTTTAAAGAGAGCTTTGAACGAGTTTATATGCAGTTTGATGGTGAAGAAATCATCCAGCAAACCCGCCCTGCTGA
ACGAGATAATGGAATAGCAACAGTTGCTTTTCCTTTATTCTCACTCATTTTATTAAGACGCTTGGGAGTATATTTTTCAA
AAATACCTCAATGGCCTACCCATATTGAAAAAGAATGTCAGATTGATAGTAATGACCCTTATGACTCAACAGGGAAACAA
CGCCATCTTTCACCATTAGTGTTTACTTCGGCTGAAAAACTTATTTTGTTTCTAGGTTGGTTCCTAGGAACAAGTATCTT
TATCGCATTTCTGGCAGGATTGGCTTATTTAAGTTGGAATTATAGATAA