Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01297  |
| T6SS type | Type i4b |
| Strain | Pseudomonas sp. JY-Q |
| Replicon (RefSeq) | chromosome (NZ_CP011525) |
| Location | 2910641..2930528 |
| Function | anti-bacterial; anti-adverse environment |
| Comment | T6SS can alleviate ROS production and enhance nicotine tolerance in order to facilitate bacterial survival and growth |
| References | [1] Li J, Xie L, Qian S, Tang Y, Shen M, Li S, Wang J, Xiong L, Lu J, Zhong W. et al (2021) A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation.. Appl Environ Microbiol. 87(9). [PudMed:33608299] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TagF | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AA098_RS13235 | 2907036..2907911 | + | 876 | WP_060537984.1 | AEC family transporter | ||
| AA098_RS13240 | 2907957..2910473 | - | 2517 | WP_064614356.1 | excinuclease ABC subunit UvrA | ||
| T6CP016180 | TssI | AA098_RS13245 (tssA) | 2910641..2911726 | - | 1086 | WP_004576643.1 | type VI secretion system protein TssA |
| T6CP016181 | TssD | AA098_RS13250 | 2911822..2912340 | - | 519 | WP_003248334.1 | type VI secretion system tube protein Hcp |
| T6CP016182 | TssM | AA098_RS13255 (tssM) | 2912484..2914979 | - | 2496 | WP_064614358.1 | type VI secretion system membrane subunit TssM |
| T6CP016183 | TagF | AA098_RS13260 (tagF) | 2914976..2915884 | - | 909 | WP_003248338.1 | type VI secretion system-associated protein TagF |
| T6CP016184 | TssM | AA098_RS13265 | 2915881..2919684 | - | 3804 | WP_064614360.1 | ImcF-like family protein |
| T6CP016185 | TssL | AA098_RS13270 | 2919715..2920431 | - | 717 | WP_003248342.1 | type IVB secretion system protein IcmH/DotU |
| T6CP016186 | TssK | AA098_RS13275 (tssK) | 2920428..2921771 | - | 1344 | WP_003248343.1 | type VI secretion system baseplate subunit TssK |
| T6CP016187 | TssJ | AA098_RS13280 (tssJ) | 2921768..2922490 | - | 723 | WP_003248345.1 | type VI secretion system lipoprotein TssJ |
| T6CP016188 | TssH | AA098_RS13285 (tssH) | 2922515..2925112 | - | 2598 | WP_064614361.1 | type VI secretion system ATPase TssH |
| T6CP016189 | TssG | AA098_RS13290 (tssG) | 2925109..2926179 | - | 1071 | WP_003248350.1 | type VI secretion system baseplate subunit TssG |
| T6CP016190 | TssF | AA098_RS13295 (tssF) | 2926143..2927963 | - | 1821 | WP_004576637.1 | type VI secretion system baseplate subunit TssF |
| T6CP016191 | TssE | AA098_RS13300 (tssE) | 2927963..2928445 | - | 483 | WP_003248355.1 | type VI secretion system baseplate subunit TssE |
| T6CP016192 | TssC | AA098_RS13305 (tssC) | 2928472..2929974 | - | 1503 | WP_003248356.1 | type VI secretion system contractile sheath large subunit |
| T6CP016193 | TssB | AA098_RS13310 (tssB) | 2929989..2930528 | - | 540 | WP_003248358.1 | type VI secretion system contractile sheath small subunit |
| AA098_RS13315 | 2930593..2931342 | - | 750 | WP_028697263.1 | hypothetical protein | ||
| AA098_RS29515 | 2931631..2931789 | + | 159 | WP_177342676.1 | hypothetical protein | ||
| AA098_RS13325 | 2931936..2932487 | - | 552 | WP_064614365.1 | hypothetical protein | ||
| AA098_RS13335 | 2932791..2933906 | + | 1116 | WP_060544990.1 | ADP-ribosylglycohydrolase family protein | ||
| AA098_RS13340 | 2934189..2934452 | - | 264 | WP_060544991.1 | hypothetical protein | ||
| AA098_RS29190 | 2934462..2934930 | - | 469 | pseudogene | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01890 |
AA098_13375 (TseN) | Tne | IMU00381 |
Pseudomonas sp. JY-Q | chromosome (NZ_CP011525) | 2938691..2939623 (-) | 939342945 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00381 |
AA098_13370 (TsiN) | EFF01890 |
Pseudomonas sp. JY-Q | chromosome (NZ_CP011525) | 2938398..2938694 (-) | 489341217 |
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|