Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01297 experimental
T6SS type Type i4b
Strain Pseudomonas sp. JY-Q
Replicon (RefSeq) chromosome (NZ_CP011525)
Location 2910641..2930528
Function anti-bacterial; anti-adverse environment
Comment T6SS can alleviate ROS production and enhance nicotine tolerance in order to facilitate bacterial survival and growth
References
[1] Li J, Xie L, Qian S, Tang Y, Shen M, Li S, Wang J, Xiong L, Lu J, Zhong W. et al (2021) A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation.. Appl Environ Microbiol. 87(9). [PudMed:33608299]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentTagFTssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number1111111111112


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
AA098_RS13235 2907036..2907911 + 876 WP_060537984.1 AEC family transporter
AA098_RS13240 2907957..2910473 - 2517 WP_064614356.1 excinuclease ABC subunit UvrA
T6CP016180 TssI AA098_RS13245 (tssA) 2910641..2911726 - 1086 WP_004576643.1 type VI secretion system protein TssA
T6CP016181 TssD AA098_RS13250 2911822..2912340 - 519 WP_003248334.1 type VI secretion system tube protein Hcp
T6CP016182 TssM AA098_RS13255 (tssM) 2912484..2914979 - 2496 WP_064614358.1 type VI secretion system membrane subunit TssM
T6CP016183 TagF AA098_RS13260 (tagF) 2914976..2915884 - 909 WP_003248338.1 type VI secretion system-associated protein TagF
T6CP016184 TssM AA098_RS13265 2915881..2919684 - 3804 WP_064614360.1 ImcF-like family protein
T6CP016185 TssL AA098_RS13270 2919715..2920431 - 717 WP_003248342.1 type IVB secretion system protein IcmH/DotU
T6CP016186 TssK AA098_RS13275 (tssK) 2920428..2921771 - 1344 WP_003248343.1 type VI secretion system baseplate subunit TssK
T6CP016187 TssJ AA098_RS13280 (tssJ) 2921768..2922490 - 723 WP_003248345.1 type VI secretion system lipoprotein TssJ
T6CP016188 TssH AA098_RS13285 (tssH) 2922515..2925112 - 2598 WP_064614361.1 type VI secretion system ATPase TssH
T6CP016189 TssG AA098_RS13290 (tssG) 2925109..2926179 - 1071 WP_003248350.1 type VI secretion system baseplate subunit TssG
T6CP016190 TssF AA098_RS13295 (tssF) 2926143..2927963 - 1821 WP_004576637.1 type VI secretion system baseplate subunit TssF
T6CP016191 TssE AA098_RS13300 (tssE) 2927963..2928445 - 483 WP_003248355.1 type VI secretion system baseplate subunit TssE
T6CP016192 TssC AA098_RS13305 (tssC) 2928472..2929974 - 1503 WP_003248356.1 type VI secretion system contractile sheath large subunit
T6CP016193 TssB AA098_RS13310 (tssB) 2929989..2930528 - 540 WP_003248358.1 type VI secretion system contractile sheath small subunit
AA098_RS13315 2930593..2931342 - 750 WP_028697263.1 hypothetical protein
AA098_RS29515 2931631..2931789 + 159 WP_177342676.1 hypothetical protein
AA098_RS13325 2931936..2932487 - 552 WP_064614365.1 hypothetical protein
AA098_RS13335 2932791..2933906 + 1116 WP_060544990.1 ADP-ribosylglycohydrolase family protein
AA098_RS13340 2934189..2934452 - 264 WP_060544991.1 hypothetical protein
AA098_RS29190 2934462..2934930 - 469 pseudogene hypothetical protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01890 experimental AA098_13375 (TseN) Tne IMU00381 experimental Pseudomonas sp. JY-Q chromosome (NZ_CP011525) 2938691..2939623 (-) 939342945

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
IMU00381 experimental AA098_13370 (TsiN) EFF01890 experimental Pseudomonas sp. JY-Q chromosome (NZ_CP011525) 2938398..2938694 (-) 489341217

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector