SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP016191
Component protein type	TssE
T6SS ID (Type)	T6SS01297 (Type i4b)
Strain	Pseudomonas sp. JY-Q
Replicon	chromosome
Sequence	Protein sequence (161 a.a.); Nucleotide sequence (483 bp)
Reference	[1] Li J, Xie L, Qian S, et al. A Type VI Secretion System Facilitates Fitness, Homeostasis, and Competitive Advantages for Environmental Adaptability and Efficient Nicotine Biodegradation. Appl Environ Microbiol. 2021 Apr 13;87(9). pii: e03113-20. doi: 10.1128/AEM.03113-20. Print 2021 Apr 13. PMID: 33608299

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	AA098_RS13300
Coordinate (Strand)	2927963..2928445 (-)
NCBI ID	WP_003248355.1
RefSeq	NZ_CP011525
Uniprot ID	I7C954_PSEPT, A0A2I0CH93_9PSED, A0A173HF49_9PSED, Q88IA1_PSEPK, A0A2L0SYT8_9PSED, I3V3X4_PSEPU, A0A7H2DJM9_9PSED, A0A1X1AEM3_PSEPU, A5W3P8_PSEP1, A0A2V4FJ58_9PSED, A0A495PCR2_9PSED, A0A2N1IWE5_9PSED
KEGG ID	ppf:Pput_2624, ppu:PP_3098, ppi:YSA_10467, ppx:T1E_2457
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
GPW_gp25	PF04965.16	8.9e-14	36..135

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-160	MSNQARLLPSLLDRLLDDRPYQSAEPAAQRTCSLAEYKASIVRDLEVLVNTRQSLVAEELDGFSQLGGSILEYGMPDFISRSVLDPHDRRLIQQQLERAISTGDRRFRRVRVQLLAQQNGHRMLTFRVDAVLRLQDISRQVSFDAVLQVNTQEYKVQNLN

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9937	-	-

Protein sequence: 161 a.a.

						>T6CP016191 NZ_CP011525:c2928445-2927963 [Pseudomonas sp. JY-Q] [TssE]
MSNQARLLPSLLDRLLDDRPYQSAEPAAQRTCSLAEYKASIVRDLEVLVNTRQSLVAEELDGFSQLGGSILEYGMPDFIS
RSVLDPHDRRLIQQQLERAISTGDRRFRRVRVQLLAQQNGHRMLTFRVDAVLRLQDISRQVSFDAVLQVNTQEYKVQNLN
*					

Nucleotide sequence: 483 bp

						>T6CP016191 NZ_CP011525:c2928445-2927963 [Pseudomonas sp. JY-Q] [TssE]
ATGAGTAACCAGGCCCGCCTGCTGCCCTCGCTGCTCGACCGACTGCTGGACGACCGTCCCTACCAGTCGGCCGAGCCCGC
AGCGCAGCGCACCTGCTCGCTGGCCGAGTACAAGGCCAGCATCGTCCGCGACCTCGAAGTCCTGGTGAACACCCGCCAGT
CCCTGGTCGCCGAAGAGCTCGACGGCTTCAGCCAGCTCGGTGGTTCCATCCTTGAATACGGCATGCCGGACTTCATCAGC
CGCAGCGTGCTCGACCCGCACGATCGTCGCCTGATCCAGCAACAGCTGGAGCGGGCGATCAGCACCGGAGACCGGCGCTT
TCGCCGGGTCCGTGTTCAGCTGTTGGCCCAGCAGAACGGCCATCGCATGTTGACCTTCCGCGTGGACGCCGTATTGCGTC
TGCAGGACATCAGCCGCCAGGTGTCATTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAACCTCAAC
TGA					