Detailed information of component protein


Summary

Component ID T6CP016187
Component protein type TssJ
T6SS ID (Type) T6SS01297 experimental (Type i4b)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (241 a.a.); Nucleotide sequence (723 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AA098_RS13280
Coordinate (Strand) 2921768..2922490 (-)
NCBI ID WP_003248345.1
RefSeq NZ_CP011525
Uniprot ID A0A173HEZ9_9PSED
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 5.3e-30 47..161

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-240 MQHKHIVLKRLTAAALLVALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDAEGKPLSVVMRVYQLTDLERFAATDAETLWDAPEKALGNTLVETREITLLPGIGQIDQWPLAKNARYVGVAAFFRDEQDARWKVAFDANSLRKDGIWFSSDGLRVLVDNTEISAMRGVDVLNKPPTADQLAAAQKAKDADATLSDKVQDAAIDKATDAASQSASNAMDSTFNSLVDSVK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9986 pos: 22-23. LAG-CG. MQHKHIVLKRLTAAALLVALAG



  Protein sequence: 241 a.a.    

>T6CP016187 NZ_CP011525:c2922490-2921768 [Pseudomonas sp. JY-Q] [TssJ]
MQHKHIVLKRLTAAALLVALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDAEGKPLSVVMRVYQLTDLE
RFAATDAETLWDAPEKALGNTLVETREITLLPGIGQIDQWPLAKNARYVGVAAFFRDEQDARWKVAFDANSLRKDGIWFS
SDGLRVLVDNTEISAMRGVDVLNKPPTADQLAAAQKAKDADATLSDKVQDAAIDKATDAASQSASNAMDSTFNSLVDSVK
*

  Nucleotide sequence: 723 bp    

>T6CP016187 NZ_CP011525:c2922490-2921768 [Pseudomonas sp. JY-Q] [TssJ]
ATGCAACACAAGCACATCGTCCTCAAACGCCTGACCGCAGCCGCCTTGCTGGTGGCGCTGGCCGGCTGCGGGGTCACCGA
CCGTATCGGCAAGCGCATGGAAGACAGCTGGGCGGCCGACATGCTGGCCGACAGCGAAAAGGTCATCCTGACCTCCGACG
GCGGCAACCAGCTCAACCCCGACGCCGAGGGCAAGCCGCTGTCGGTGGTGATGCGCGTGTATCAGCTGACCGACCTCGAG
CGCTTCGCGGCTACCGATGCCGAGACCCTGTGGGACGCCCCGGAAAAAGCCTTGGGCAACACCCTGGTGGAAACCCGCGA
GATCACCCTGCTGCCCGGCATTGGCCAGATCGACCAGTGGCCGCTGGCCAAGAACGCGCGCTACGTCGGCGTGGCGGCGT
TCTTCCGCGATGAGCAGGACGCGCGCTGGAAAGTCGCCTTCGACGCCAACTCGCTGCGCAAGGACGGTATCTGGTTCTCC
TCCGACGGCCTGCGGGTGCTGGTGGACAACACCGAAATCAGCGCCATGCGGGGCGTAGACGTACTGAACAAACCGCCGAC
CGCCGACCAGCTGGCCGCTGCGCAGAAGGCCAAGGATGCCGACGCGACCCTCTCCGACAAGGTGCAGGACGCGGCCATCG
ACAAAGCCACCGACGCCGCCAGCCAGTCGGCCAGCAACGCCATGGATTCAACCTTCAATTCTTTAGTGGATAGCGTCAAA
TGA