Detailed information of component protein
Summary
| Component ID | T6CP016187 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS01297  (Type i4b) |
| Strain | Pseudomonas sp. JY-Q |
| Replicon | chromosome |
| Sequence | Protein sequence (241 a.a.); Nucleotide sequence (723 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AA098_RS13280 |
| Coordinate (Strand) | 2921768..2922490 (-) |
| NCBI ID | WP_003248345.1 |
| RefSeq | NZ_CP011525 |
| Uniprot ID | A0A173HEZ9_9PSED |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 5.3e-30 | 47..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-240 | MQHKHIVLKRLTAAALLVALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDAEGKPLSVVMRVYQLTDLERFAATDAETLWDAPEKALGNTLVETREITLLPGIGQIDQWPLAKNARYVGVAAFFRDEQDARWKVAFDANSLRKDGIWFSSDGLRVLVDNTEISAMRGVDVLNKPPTADQLAAAQKAKDADATLSDKVQDAAIDKATDAASQSASNAMDSTFNSLVDSVK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9986 | pos: 22-23. LAG-CG. | MQHKHIVLKRLTAAALLVALAG |
Protein sequence: 241 a.a.
>T6CP016187 NZ_CP011525:c2922490-2921768 [Pseudomonas sp. JY-Q] [TssJ]
MQHKHIVLKRLTAAALLVALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDAEGKPLSVVMRVYQLTDLE
RFAATDAETLWDAPEKALGNTLVETREITLLPGIGQIDQWPLAKNARYVGVAAFFRDEQDARWKVAFDANSLRKDGIWFS
SDGLRVLVDNTEISAMRGVDVLNKPPTADQLAAAQKAKDADATLSDKVQDAAIDKATDAASQSASNAMDSTFNSLVDSVK
*
MQHKHIVLKRLTAAALLVALAGCGVTDRIGKRMEDSWAADMLADSEKVILTSDGGNQLNPDAEGKPLSVVMRVYQLTDLE
RFAATDAETLWDAPEKALGNTLVETREITLLPGIGQIDQWPLAKNARYVGVAAFFRDEQDARWKVAFDANSLRKDGIWFS
SDGLRVLVDNTEISAMRGVDVLNKPPTADQLAAAQKAKDADATLSDKVQDAAIDKATDAASQSASNAMDSTFNSLVDSVK
*
Nucleotide sequence: 723 bp
>T6CP016187 NZ_CP011525:c2922490-2921768 [Pseudomonas sp. JY-Q] [TssJ]
ATGCAACACAAGCACATCGTCCTCAAACGCCTGACCGCAGCCGCCTTGCTGGTGGCGCTGGCCGGCTGCGGGGTCACCGA
CCGTATCGGCAAGCGCATGGAAGACAGCTGGGCGGCCGACATGCTGGCCGACAGCGAAAAGGTCATCCTGACCTCCGACG
GCGGCAACCAGCTCAACCCCGACGCCGAGGGCAAGCCGCTGTCGGTGGTGATGCGCGTGTATCAGCTGACCGACCTCGAG
CGCTTCGCGGCTACCGATGCCGAGACCCTGTGGGACGCCCCGGAAAAAGCCTTGGGCAACACCCTGGTGGAAACCCGCGA
GATCACCCTGCTGCCCGGCATTGGCCAGATCGACCAGTGGCCGCTGGCCAAGAACGCGCGCTACGTCGGCGTGGCGGCGT
TCTTCCGCGATGAGCAGGACGCGCGCTGGAAAGTCGCCTTCGACGCCAACTCGCTGCGCAAGGACGGTATCTGGTTCTCC
TCCGACGGCCTGCGGGTGCTGGTGGACAACACCGAAATCAGCGCCATGCGGGGCGTAGACGTACTGAACAAACCGCCGAC
CGCCGACCAGCTGGCCGCTGCGCAGAAGGCCAAGGATGCCGACGCGACCCTCTCCGACAAGGTGCAGGACGCGGCCATCG
ACAAAGCCACCGACGCCGCCAGCCAGTCGGCCAGCAACGCCATGGATTCAACCTTCAATTCTTTAGTGGATAGCGTCAAA
TGA
ATGCAACACAAGCACATCGTCCTCAAACGCCTGACCGCAGCCGCCTTGCTGGTGGCGCTGGCCGGCTGCGGGGTCACCGA
CCGTATCGGCAAGCGCATGGAAGACAGCTGGGCGGCCGACATGCTGGCCGACAGCGAAAAGGTCATCCTGACCTCCGACG
GCGGCAACCAGCTCAACCCCGACGCCGAGGGCAAGCCGCTGTCGGTGGTGATGCGCGTGTATCAGCTGACCGACCTCGAG
CGCTTCGCGGCTACCGATGCCGAGACCCTGTGGGACGCCCCGGAAAAAGCCTTGGGCAACACCCTGGTGGAAACCCGCGA
GATCACCCTGCTGCCCGGCATTGGCCAGATCGACCAGTGGCCGCTGGCCAAGAACGCGCGCTACGTCGGCGTGGCGGCGT
TCTTCCGCGATGAGCAGGACGCGCGCTGGAAAGTCGCCTTCGACGCCAACTCGCTGCGCAAGGACGGTATCTGGTTCTCC
TCCGACGGCCTGCGGGTGCTGGTGGACAACACCGAAATCAGCGCCATGCGGGGCGTAGACGTACTGAACAAACCGCCGAC
CGCCGACCAGCTGGCCGCTGCGCAGAAGGCCAAGGATGCCGACGCGACCCTCTCCGACAAGGTGCAGGACGCGGCCATCG
ACAAAGCCACCGACGCCGCCAGCCAGTCGGCCAGCAACGCCATGGATTCAACCTTCAATTCTTTAGTGGATAGCGTCAAA
TGA