Detailed information of component protein


Summary

Component ID T6CP016180
Component protein type TssI
T6SS ID (Type) T6SS01297 experimental (Type i4b)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AA098_RS13245
Coordinate (Strand) 2910641..2911726 (-)
NCBI ID WP_004576643.1
RefSeq NZ_CP011525
Uniprot ID A0A2I0CH61_9PSED, A0A173HEV3_9PSED, A0A1Y5KXR7_PSEPU
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-30 19..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-361 MPEILNDLSLATLVAPIEGGSGEDLSFSALFDQIKEARRADPDYLTQGDWQTDLKTADWEQVINLSAQGLAQQSKDLMLVAWLCEGLAQREHFEGITFGLELTEQLLVAFWETLYPTLEDGLDERAARLSWLKTTLTDIAGGLPIIQGQHFGVLRYDESRHVENLALQNPKAMQTALNEGKINAEIFQRSVALTDTDYLRAKAQQIATSLNACKRLQASADRLFGHEAPSFASLADMLSRASQLAEKLLKDRGVELHPAIPEEAQPQATGANLHEAGEPMNATPPTTAPAALRTTPLTRDEAFTMLAGIAQYFKQSEPQSPVPYLIERAIKWGNMPLEGWLSDVIKDNNVVDNIRDVLGTR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9819 - -



  Protein sequence: 362 a.a.    

>T6CP016180 NZ_CP011525:c2911726-2910641 [Pseudomonas sp. JY-Q] [TssI]
MPEILNDLSLATLVAPIEGGSGEDLSFSALFDQIKEARRADPDYLTQGDWQTDLKTADWEQVINLSAQGLAQQSKDLMLV
AWLCEGLAQREHFEGITFGLELTEQLLVAFWETLYPTLEDGLDERAARLSWLKTTLTDIAGGLPIIQGQHFGVLRYDESR
HVENLALQNPKAMQTALNEGKINAEIFQRSVALTDTDYLRAKAQQIATSLNACKRLQASADRLFGHEAPSFASLADMLSR
ASQLAEKLLKDRGVELHPAIPEEAQPQATGANLHEAGEPMNATPPTTAPAALRTTPLTRDEAFTMLAGIAQYFKQSEPQS
PVPYLIERAIKWGNMPLEGWLSDVIKDNNVVDNIRDVLGTR*

  Nucleotide sequence: 1086 bp    

>T6CP016180 NZ_CP011525:c2911726-2910641 [Pseudomonas sp. JY-Q] [TssI]
ATGCCTGAAATTCTCAATGACCTCTCGCTGGCCACACTGGTCGCCCCTATCGAGGGTGGCAGTGGTGAAGACTTGAGCTT
CTCTGCCTTGTTCGACCAGATCAAGGAGGCACGCCGGGCGGACCCTGACTACCTGACCCAGGGCGACTGGCAAACCGACT
TGAAGACTGCCGACTGGGAGCAGGTGATCAACCTGTCGGCTCAAGGGCTTGCGCAGCAAAGCAAAGACCTGATGCTGGTG
GCCTGGCTCTGCGAGGGGCTGGCCCAACGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGTTGACCGAACAGCTCCT
GGTTGCGTTCTGGGAAACGCTGTATCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGTTGAAGA
CCACGCTCACCGACATTGCCGGTGGCTTGCCCATTATCCAAGGGCAGCATTTTGGCGTGTTGCGCTATGACGAGTCACGC
CATGTAGAAAACCTCGCCTTGCAAAACCCCAAGGCAATGCAGACAGCGCTGAACGAAGGCAAGATCAACGCCGAGATCTT
CCAGCGCTCGGTAGCGCTTACCGACACCGATTACCTGCGCGCCAAGGCCCAGCAGATCGCTACCAGCCTGAATGCATGCA
AACGCCTGCAGGCCAGCGCCGACCGCCTGTTCGGCCACGAGGCGCCCAGCTTTGCCAGCCTTGCCGACATGCTATCGCGT
GCCAGCCAGCTGGCGGAAAAACTGCTCAAGGACCGCGGCGTAGAGCTTCACCCCGCCATCCCGGAGGAAGCACAGCCACA
GGCCACGGGCGCCAACCTCCACGAAGCAGGTGAGCCGATGAATGCCACGCCCCCGACGACCGCGCCTGCAGCCCTGCGCA
CCACCCCGCTGACCCGCGACGAGGCATTCACCATGCTTGCGGGCATCGCCCAGTACTTCAAACAGAGCGAACCGCAAAGC
CCGGTACCCTACCTGATCGAACGCGCTATCAAGTGGGGCAACATGCCGCTGGAAGGCTGGTTGAGTGACGTGATCAAGGA
CAACAATGTGGTGGACAACATCCGCGATGTGCTGGGCACCCGCTAG