Detailed information of component protein


Summary

Component ID T6CP016188
Component protein type TssH
T6SS ID (Type) T6SS01297 experimental (Type i4b)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (866 a.a.); Nucleotide sequence (2598 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS13285
Coordinate (Strand) 2922515..2925112 (-)
NCBI ID WP_064614361.1
RefSeq NZ_CP011525
Uniprot ID A0A173HF18_9PSED
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.9e-42 596..763
AAA_lid_9 PF17871.3 4.4e-28 365..456
ClpB_D2-small PF10431.11 8.2e-13 772..843
AAA PF00004.31 1.2e-08 225..337
Clp_N PF02861.22 3.6e-06 21..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-865 VNLKSLFAKLNETSRTATESAAALCLSEHHYDVEVEHLLLQLLDDNDSDLAPILRHYEVVAERLQAQLVTALGTFKKGNTRTPALSPHITRMIEQAWLLASIEYGVGQVRSAHLLQALLDDAELRRVVIASAPELEKINADDLRVNLAALVEGSAESRQASPLASPAAPVSTSSKASGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEGLALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSNRYITGRQLPDKAVSVLDTACARIALAQSSLPGALEDCRRQIDNLQAEIGVLGHEAGKGHDHARRLEALQAALQAEQQQEQQLNAQWQQELELVEQLKALDAANDADAQQLNTLRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQRLPALLGERVLGQDHALHEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEAHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNTGTERIMQTCLNATELPTPEAIVEDLRDQLNHVFKPAFLGRLSIVPFYPVQDQILERIVALKLERIAKRFARNHQAELSYDQALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDAPIQHLAIELGSDGDFAYRLA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -


  Protein sequence: 866 a.a.    

>T6CP016188 NZ_CP011525:c2925112-2922515 [Pseudomonas sp. JY-Q] [TssH]
VNLKSLFAKLNETSRTATESAAALCLSEHHYDVEVEHLLLQLLDDNDSDLAPILRHYEVVAERLQAQLVTALGTFKKGNT
RTPALSPHITRMIEQAWLLASIEYGVGQVRSAHLLQALLDDAELRRVVIASAPELEKINADDLRVNLAALVEGSAESRQA
SPLASPAAPVSTSSKASGKTPALDQYTVNLTQSAREGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIAQGDVPAVLKDVALHTLDLGLLQAGAGVKGEFENRLKAVIEEVKRSLHPIILFIDEAHTLIGSGGQAGQNDAANL
LKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPDEDKAIHMLRGLLGKMREHHKVAVMDEALVQAVRLSN
RYITGRQLPDKAVSVLDTACARIALAQSSLPGALEDCRRQIDNLQAEIGVLGHEAGKGHDHARRLEALQAALQAEQQQEQ
QLNAQWQQELELVEQLKALDAANDADAQQLNTLRAELARVQGDQPLVHALVDSGAIAQVISGWTGIPLGKMLRDEIDTVQ
RLPALLGERVLGQDHALHEIGKRIKISRARMEDPNKPIGVFLLLGPSGVGKTETALALADTLYGGERNLITINMSEYQEA
HTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTSNT
GTERIMQTCLNATELPTPEAIVEDLRDQLNHVFKPAFLGRLSIVPFYPVQDQILERIVALKLERIAKRFARNHQAELSYD
QALVKAIAARCTEVDSGARNIDNILSQTLMPELAQRVLERMAQDAPIQHLAIELGSDGDFAYRLA*

  Nucleotide sequence: 2598 bp    

>T6CP016188 NZ_CP011525:c2925112-2922515 [Pseudomonas sp. JY-Q] [TssH]
GTGAACCTGAAGTCTCTGTTCGCCAAGCTCAACGAAACCAGCCGCACGGCCACCGAAAGCGCGGCGGCCCTGTGCCTGTC
CGAGCACCATTACGACGTGGAAGTGGAGCACCTGCTGCTGCAATTGCTCGACGACAACGACAGCGACCTGGCGCCGATCC
TGCGCCACTACGAGGTCGTCGCCGAACGCCTGCAAGCGCAGCTGGTCACCGCCCTGGGCACCTTCAAGAAAGGTAATACC
CGCACCCCGGCGCTGTCGCCGCACATTACCCGCATGATCGAGCAAGCCTGGTTGCTGGCCTCGATCGAATACGGCGTAGG
CCAGGTGCGCAGCGCTCACCTGCTGCAGGCTCTGCTTGACGATGCTGAACTGCGTCGCGTGGTGATCGCCTCTGCGCCGG
AGCTGGAAAAAATCAACGCCGATGACCTGCGCGTGAACCTTGCCGCGCTGGTGGAGGGTAGCGCCGAGTCCAGGCAGGCC
AGCCCGCTGGCCAGCCCAGCGGCGCCAGTGAGCACGTCGAGCAAGGCCAGCGGCAAGACCCCAGCGCTGGACCAGTACAC
GGTCAACCTTACCCAAAGCGCCCGCGAAGGCCGCATCGACCCGGTGCTGGGCCGTGAGTTCGAAGTACGGCAGATGGTCG
ACATCCTCACCCGCCGCCGACAGAACAACCCGATCCTCACGGGCGAAGCCGGGGTCGGCAAAACCGCCGTGGTCGAAGGC
CTGGCGCTGCGCATCGCCCAGGGTGACGTGCCGGCGGTGCTCAAGGACGTTGCCCTGCACACCCTCGACCTGGGCCTGTT
GCAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACC
CGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGCTCCGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTG
CTCAAGCCGGCCCTGGCCCGTGGCGAGTTGCGCACCATCGCTGCCACTACCTGGGCCGAATACAAGAAGTACTTCGAGAA
GGACGCCGCCCTCGCCCGCCGCTTCCAGGTGGTCAAAGTGGAAGAGCCCGACGAAGACAAGGCCATTCACATGCTGCGCG
GCCTGCTCGGCAAGATGCGCGAGCACCACAAGGTGGCGGTGATGGACGAAGCGCTGGTGCAGGCGGTACGCCTGTCCAAC
CGCTACATCACCGGCCGCCAGCTGCCCGACAAGGCGGTCAGCGTGCTCGACACAGCCTGCGCGCGCATTGCCCTGGCGCA
ATCTTCGCTGCCCGGCGCACTGGAAGACTGCCGCCGGCAGATCGACAACCTGCAAGCAGAAATCGGCGTGCTCGGCCACG
AAGCCGGCAAGGGGCACGACCATGCCCGCCGCCTGGAAGCGCTGCAGGCTGCCCTGCAGGCCGAGCAGCAACAAGAACAG
CAACTCAATGCCCAGTGGCAGCAGGAGCTGGAGCTGGTCGAACAGCTCAAGGCGCTGGACGCCGCCAACGATGCCGACGC
TCAGCAGCTCAATACCCTGCGTGCCGAGCTGGCGCGCGTGCAAGGCGACCAGCCACTGGTCCATGCGCTGGTCGACAGCG
GCGCCATCGCCCAGGTCATCAGCGGCTGGACCGGCATCCCGCTGGGCAAGATGCTGCGTGACGAAATCGATACCGTGCAG
CGCCTGCCGGCCCTGCTTGGTGAACGCGTGCTGGGCCAGGACCACGCCCTGCACGAGATCGGCAAGCGCATCAAGATTTC
CCGAGCGCGCATGGAAGACCCGAACAAACCGATTGGCGTGTTCCTGCTGCTCGGCCCCAGCGGCGTCGGCAAGACCGAAA
CCGCCCTGGCCCTGGCCGACACCTTGTACGGCGGCGAGCGCAACCTGATCACCATCAACATGTCCGAGTACCAGGAGGCC
CACACCGTGTCGAGCCTCAAGGGCTCGCCACCCGGCTATGTCGGCTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTGCG
CCGCAAGCCGTACAGCGTGGTCTTGCTCGACGAGGTGGAAAAAGCCCACCCCGACGTGCTGGAACTGTTCTTCCAGGTGT
TCGACAAGGGCGTGCTGGACGATGGCGAGGGCCGCGAAATCAATTTCCGCAACACGGTGATCATCCTCACCTCCAACACC
GGCACCGAGCGCATCATGCAGACCTGCCTGAACGCCACCGAGCTGCCGACGCCCGAGGCGATCGTCGAGGACCTGCGCGA
CCAGCTCAACCATGTGTTCAAGCCGGCCTTCCTCGGTCGCCTGAGCATCGTGCCGTTCTACCCGGTGCAGGACCAGATCC
TCGAGCGCATCGTCGCCCTCAAGCTCGAACGCATCGCCAAGCGCTTCGCCCGCAACCACCAGGCCGAGCTCAGCTATGAC
CAGGCGCTGGTCAAGGCCATCGCCGCGCGCTGCACCGAGGTCGACAGCGGCGCACGCAACATCGACAACATCCTGTCCCA
GACCCTGATGCCCGAACTCGCCCAGCGCGTGCTCGAGCGCATGGCCCAGGACGCGCCGATCCAGCACCTTGCGATCGAGC
TGGGCAGCGATGGCGATTTCGCCTATCGCCTGGCCTGA