Detailed information of component protein


Summary

Component ID T6CP016184
Component protein type TssM
T6SS ID (Type) T6SS01297 experimental (Type i4b)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (1268 a.a.); Nucleotide sequence (3804 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS13265
Coordinate (Strand) 2915881..2919684 (-)
NCBI ID WP_064614360.1
RefSeq NZ_CP011525
Uniprot ID A0A173HEW0_9PSED
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 7.1e-56 181..432
IcmF-related PF06761.14 1.9e-50 491..878
IcmF_C PF06744.14 7e-20 1142..1241
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MKTLLRLLKSFW
Transmembrane helix 13-35 VLLPLLWLASLLICWLAAPLVPW
Outside 36-39 LRHH
Transmembrane helix 40-57 VPEALAIISACFLLVIVL
Inside 58-433 RQYQRIRAEHNLENLLQIEVDRSWNATGEFRDQQVLRERLKHAIAMLRTDRSAGGGGKAALSDLPWYLVVGMSAAGKTSLLTHSGLSASIATANDSESGTQHCDWYFSPDAVMIDTAGRYLRDDQSASEFSAFLRMLRKQRGKAAINGLVLVVSLPELLAANSDERNALAAQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFGLSEIRTNGLHAVLQTRLKRLQAHIRQHVDAQMIALGAEADSTLLNFPQYFAALSGVLEQFLDHFTRGHRGGAPLLLRGLYFTSALQNGQQLGQVYEDVIADEFALQAAYDEQAGHVGKALGNRSYFITDTFRQVIFPDRDLILYQSRLGRQA
Transmembrane helix 434-456 AFSPLLLGLAAATGLLFIGWQAL
Outside 457-1267 SFANNRQWLDSLRGQLAHIEQAADREQQLAAGKGLEVLREQMANVEAHRLQGVPLQLGGGLYQGEAIHQVTRSAYLAQLRSQALEPIARSLQVQMRAFNTFANGINQELEFTPAPQPKKRNGKPLAPAIAARAQAALGNTRAGAYAAKVNLATASDGAELSAATGGLSLSEEMLGRLDEQQVASIIEAYNTLKLYLLLTEPQAHPDPAFVAASLPQAWASAAAEGTPADAGVIAENAPLYVQLLEQGQAPSLPRNEQLINETRQNLKSFMISSSLVDREYLRLQLESSRQFPALSLNDLVPQPGRALLYGTAGVPAIYTRQGWDTFVKPELIKLVSGNLRNESDWVLDGEGGDAIVQKANFVREFMTRYKRDYTQAWYKMVSSVGVRHFADLASATRELGLLSDVQNSPVKNLLQAVNDNTQWDLPVKQAIPAAGTSRDDGFWSKVTGLFDANDTLPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAALRKLKVRMNNIQRSQDVGKSSKQLISETLEGQPSEITTVRNYVESSVDTSQDGLSRSLQGLFSLPIQYAWATLRDPAGEQIAKAWAQQIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFVDPDSGLLPAFKRNEIGNLAGGEGLGVGDGKGPALVNPGMLNSIDKASSVGQVIASLSDRDNGFEIMLEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSTAPGARLDVVTLSGTRVTVFDFPGRWGLLRMNESARVDDLDGIQQRFSWNTASGRVSLVVRNFGGVKLTDLGDVKALSALNSRGAQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9719 - -


  Protein sequence: 1268 a.a.    

>T6CP016184 NZ_CP011525:c2919684-2915881 [Pseudomonas sp. JY-Q] [TssM]
MKTLLRLLKSFWVLLPLLWLASLLICWLAAPLVPWLRHHVPEALAIISACFLLVIVLRQYQRIRAEHNLENLLQIEVDRS
WNATGEFRDQQVLRERLKHAIAMLRTDRSAGGGGKAALSDLPWYLVVGMSAAGKTSLLTHSGLSASIATANDSESGTQHC
DWYFSPDAVMIDTAGRYLRDDQSASEFSAFLRMLRKQRGKAAINGLVLVVSLPELLAANSDERNALAAQLVARVEEYAEC
LDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFGLSEIRTNGLHAVLQTRLKRLQAHIRQHVDAQMIALGAEA
DSTLLNFPQYFAALSGVLEQFLDHFTRGHRGGAPLLLRGLYFTSALQNGQQLGQVYEDVIADEFALQAAYDEQAGHVGKA
LGNRSYFITDTFRQVIFPDRDLILYQSRLGRQAAFSPLLLGLAAATGLLFIGWQALSFANNRQWLDSLRGQLAHIEQAAD
REQQLAAGKGLEVLREQMANVEAHRLQGVPLQLGGGLYQGEAIHQVTRSAYLAQLRSQALEPIARSLQVQMRAFNTFANG
INQELEFTPAPQPKKRNGKPLAPAIAARAQAALGNTRAGAYAAKVNLATASDGAELSAATGGLSLSEEMLGRLDEQQVAS
IIEAYNTLKLYLLLTEPQAHPDPAFVAASLPQAWASAAAEGTPADAGVIAENAPLYVQLLEQGQAPSLPRNEQLINETRQ
NLKSFMISSSLVDREYLRLQLESSRQFPALSLNDLVPQPGRALLYGTAGVPAIYTRQGWDTFVKPELIKLVSGNLRNESD
WVLDGEGGDAIVQKANFVREFMTRYKRDYTQAWYKMVSSVGVRHFADLASATRELGLLSDVQNSPVKNLLQAVNDNTQWD
LPVKQAIPAAGTSRDDGFWSKVTGLFDANDTLPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAALR
KLKVRMNNIQRSQDVGKSSKQLISETLEGQPSEITTVRNYVESSVDTSQDGLSRSLQGLFSLPIQYAWATLRDPAGEQIA
KAWAQQIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFVDPDSGLLPAFKRNEIGNLAGGEGLGVGDGKGPALVNPGMLNS
IDKASSVGQVIASLSDRDNGFEIMLEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSTAPGARLDVVTLSGTRVTV
FDFPGRWGLLRMNESARVDDLDGIQQRFSWNTASGRVSLVVRNFGGVKLTDLGDVKALSALNSRGAQ*

  Nucleotide sequence: 3804 bp    

>T6CP016184 NZ_CP011525:c2919684-2915881 [Pseudomonas sp. JY-Q] [TssM]
ATGAAAACATTACTGCGTCTGTTGAAAAGTTTCTGGGTGCTGCTGCCATTGCTGTGGCTGGCTAGCCTGTTGATTTGCTG
GCTGGCCGCGCCGCTGGTGCCGTGGCTGCGTCATCATGTGCCTGAAGCGCTGGCAATCATCAGTGCCTGCTTCCTGCTGG
TAATCGTGCTGCGCCAATACCAGCGCATTCGCGCCGAACACAACCTGGAGAACCTGCTGCAGATCGAGGTCGACCGCTCG
TGGAATGCCACTGGCGAGTTCCGTGACCAGCAGGTGCTGCGTGAGCGCCTGAAGCACGCCATCGCCATGCTGCGCACCGA
CCGCTCCGCGGGTGGCGGCGGCAAGGCGGCGCTGTCCGACCTGCCCTGGTACCTGGTGGTCGGCATGTCGGCGGCCGGCA
AGACCTCGCTGCTGACCCATTCCGGCCTGTCGGCCAGCATCGCTACGGCCAACGACAGCGAAAGCGGTACCCAGCACTGC
GACTGGTACTTCAGCCCCGACGCCGTGATGATCGACACCGCCGGGCGCTACCTGCGCGACGACCAGTCGGCCAGCGAGTT
CTCGGCCTTTCTGCGCATGCTGCGTAAGCAGCGCGGCAAAGCGGCGATCAATGGCCTGGTCCTGGTGGTCAGCCTGCCCG
AACTGCTGGCGGCCAACAGCGATGAGCGCAATGCCCTGGCGGCCCAGCTGGTGGCCCGGGTGGAAGAATACGCCGAATGC
CTCGATGCCAACCCGCCGGTTTACCTGATGCTGAGCAAGACCGACCAGTTGCCGGGCTTCAGCCAGGCTTTCGACGGCCT
CGACCTGCACGAACGCCAGCAGCCGCTGGGCATGACCTTTGGCCTTTCGGAAATCCGCACCAACGGCCTGCACGCCGTGC
TGCAGACGCGCCTGAAGAGGCTGCAGGCTCATATTCGCCAGCACGTCGACGCGCAGATGATCGCCCTCGGTGCCGAAGCC
GACAGCACCCTGCTGAATTTCCCGCAGTACTTCGCCGCCCTCAGCGGTGTGCTCGAGCAATTCCTCGACCACTTCACCCG
CGGCCATCGCGGCGGTGCCCCGCTGCTGCTACGTGGCCTGTACTTCACCAGTGCACTGCAGAACGGGCAGCAACTGGGGC
AGGTCTATGAAGACGTCATCGCCGACGAATTCGCCCTGCAGGCCGCCTACGATGAACAGGCCGGGCACGTCGGCAAGGCC
CTGGGCAACCGCAGCTACTTCATCACCGACACCTTCCGCCAGGTGATCTTCCCCGACCGCGACCTGATCCTTTACCAGTC
GCGCCTGGGCCGCCAGGCTGCGTTCAGCCCGCTGCTACTGGGCCTGGCCGCCGCCACCGGGTTGCTGTTCATCGGTTGGC
AAGCGCTGTCGTTCGCCAATAACCGCCAGTGGCTGGACAGCCTGCGCGGGCAGCTGGCGCACATCGAACAGGCAGCAGAC
CGCGAGCAGCAGCTGGCCGCAGGCAAGGGCCTGGAAGTGCTGCGTGAACAGATGGCCAACGTCGAGGCCCATCGCCTGCA
GGGAGTGCCCTTGCAGTTGGGTGGCGGCCTGTACCAGGGCGAGGCGATTCACCAGGTGACCCGCAGCGCCTACCTGGCGC
AGCTGCGCAGCCAGGCGCTGGAACCGATCGCACGCAGCCTGCAGGTGCAGATGCGGGCGTTCAACACCTTCGCCAACGGT
ATCAATCAGGAGCTGGAATTCACCCCGGCCCCGCAGCCGAAGAAGCGCAATGGCAAGCCGCTGGCCCCTGCCATTGCGGC
CAGGGCCCAGGCCGCGCTGGGCAACACCCGCGCTGGCGCCTATGCCGCCAAGGTCAACCTGGCCACTGCCAGCGATGGCG
CCGAGCTGTCCGCCGCCACCGGTGGGCTGTCACTGTCCGAAGAAATGCTCGGGCGCCTGGACGAGCAGCAGGTGGCCTCG
ATCATCGAGGCCTACAACACCCTCAAGCTGTACCTGTTGCTGACCGAGCCCCAGGCCCATCCAGACCCGGCCTTCGTCGC
TGCCAGCCTGCCCCAGGCGTGGGCCAGCGCCGCCGCCGAAGGCACCCCGGCCGACGCTGGCGTGATCGCGGAAAATGCCC
CGCTGTACGTGCAGTTGCTGGAACAGGGGCAGGCGCCGTCGTTGCCGCGCAACGAACAGCTGATCAACGAAACCCGGCAG
AACCTCAAGTCGTTCATGATCTCCAGCTCGCTGGTCGATCGCGAGTACCTGCGCCTGCAGCTCGAGTCGAGCCGGCAGTT
CCCGGCGCTGAGCCTCAACGACCTGGTCCCGCAACCAGGCCGCGCGCTGCTGTACGGAACCGCGGGTGTGCCGGCGATCT
ACACCCGCCAGGGCTGGGACACCTTCGTCAAGCCCGAGCTGATCAAGCTGGTGTCGGGCAACCTGCGCAACGAGTCGGAC
TGGGTGCTGGACGGCGAAGGCGGCGATGCCATCGTGCAGAAGGCCAACTTCGTGCGCGAGTTCATGACCCGCTACAAGCG
CGACTACACCCAGGCCTGGTACAAGATGGTCAGCAGCGTTGGCGTGCGCCACTTCGCCGACCTGGCCTCGGCGACCCGGG
AACTGGGGCTATTGAGCGACGTACAGAACTCGCCAGTGAAGAACCTGCTGCAGGCGGTCAACGACAATACCCAGTGGGAC
CTGCCGGTCAAGCAAGCCATCCCGGCCGCCGGCACCAGCCGCGATGACGGCTTCTGGAGCAAGGTCACCGGTCTGTTCGA
CGCCAACGACACCCTGCCTGCCAACGTCGCCCCGGCCCTGCCGGCGGTGGACGACGGCAGCCTGGCCAAGCGCTTCGAGC
CGGTGGCGCGGGTGTTCGCTGAAAACAACGCCGAAGGTGCCGACAGCACCATCATGGACCGCTACCTGGCCGCCTTGCGC
AAACTCAAGGTGCGCATGAACAACATCCAGCGTTCGCAGGATGTGGGCAAGAGCAGCAAACAGTTGATCAGCGAGACCCT
GGAAGGCCAGCCGAGCGAAATCACCACCGTGCGCAACTACGTGGAAAGCAGCGTCGACACCAGCCAGGATGGCCTGTCGC
GCTCGCTGCAGGGGCTGTTCAGCCTGCCCATCCAGTATGCCTGGGCGACCCTGCGCGACCCAGCCGGCGAGCAGATCGCC
AAGGCCTGGGCGCAGCAGATCGCCAAGCCCTGGGAGCAGGTCATGGCACACCGTTACCCGATTGCCGGCAGCAGCCGCAA
CGAGGCTTCGGTGAAAGACCTGCAACGGTTCGTGGATCCCGACAGCGGCCTGCTGCCGGCCTTCAAGCGCAACGAAATCG
GCAACCTGGCCGGTGGTGAAGGTCTGGGCGTGGGCGATGGCAAGGGGCCGGCGCTGGTCAACCCTGGCATGCTCAACAGC
ATCGACAAGGCCAGCTCCGTGGGCCAGGTGATCGCCAGCCTGTCGGACCGTGACAACGGCTTCGAAATCATGCTGGAACC
TTCAGCCAACTTCACCGACATCGTCTTCACCCTCGATGGCCAGGAGCAGCACTACCGCAACGGCCGCAGCAGCTGGAACC
GCTTCGCCTGGCCGGGCACCAGCACCGCGCCGGGCGCGCGCCTGGACGTCGTCACCCTGAGCGGCACACGGGTCACCGTG
TTCGATTTCCCAGGGCGGTGGGGCCTGCTGCGCATGAACGAGAGCGCTCGGGTCGACGACCTGGACGGCATTCAGCAACG
CTTCAGCTGGAACACCGCCAGCGGCCGCGTAAGCCTTGTCGTGCGCAACTTCGGTGGGGTCAAGCTGACCGATCTGGGTG
ACGTCAAGGCCCTGAGCGCCCTCAACAGCAGGGGCGCGCAATGA