Detailed information of component protein


Summary

Component ID T6CP016190
Component protein type TssF
T6SS ID (Type) T6SS01297 experimental (Type i4b)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (607 a.a.); Nucleotide sequence (1821 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS13295
Coordinate (Strand) 2926143..2927963 (-)
NCBI ID WP_004576637.1
RefSeq NZ_CP011525
Uniprot ID A0A2I0CH67_9PSED, A0A173HEW4_9PSED
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.4e-216 1..603
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-606 MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIVELSLGRHEKVTEAYRVARHTEMHANPVEGVVCKFRTCYPVELWPITVQQASFTEMERSAFNGHSADLVARLRIRLAATGDALFGQMDMNRLRFFLDGEATLMLQLYELLFNNLAKATLSFDDQGRRREVALPADALNTVGYARDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLARLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYPVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRRNQGDATAMSIRVVDRDLELIDASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLIAHLSLNHLSLVSQGREVLLELLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDESQFIGSGVFLFGKVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPARTGDQPLV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -


  Protein sequence: 607 a.a.    

>T6CP016190 NZ_CP011525:c2927963-2926143 [Pseudomonas sp. JY-Q] [TssF]
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLY
PHYLRPTPSMSIVELSLGRHEKVTEAYRVARHTEMHANPVEGVVCKFRTCYPVELWPITVQQASFTEMERSAFNGHSADL
VARLRIRLAATGDALFGQMDMNRLRFFLDGEATLMLQLYELLFNNLAKATLSFDDQGRRREVALPADALNTVGYARDEGL
VDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLARLTQNIGRNNFKLNCTPIIN
LFRQQAEPIKLTHTQHEYPVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRRNQGDA
TAMSIRVVDRDLELIDASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLI
AHLSLNHLSLVSQGREVLLELLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDESQFIGSGVF
LFGKVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPARTGDQPLV*

  Nucleotide sequence: 1821 bp    

>T6CP016190 NZ_CP011525:c2927963-2926143 [Pseudomonas sp. JY-Q] [TssF]
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTTCTCGGCCAGGAGTTTGCCGCGCAGTA
CCCGAAGATCGCTTCGCGGCTGCTGATCGAAGGCGACAACTGCGAAGACCCGCACACCGAGCGCCTGATCGAGGCGTTCT
CGTTCCTGTCTGCGCGGGTGCACAAGAAACTCGATGACGAGTTTCCGGAAATCGTCGAATCCTTCCTCGAGGTGTTGTAC
CCCCACTACCTGCGCCCTACTCCGTCGATGTCGATTGTCGAACTGAGCCTGGGCAGGCACGAGAAAGTCACCGAAGCCTA
CCGCGTGGCGCGCCATACCGAGATGCATGCCAATCCCGTGGAAGGCGTGGTGTGCAAGTTCCGCACCTGCTACCCGGTAG
AGCTGTGGCCGATTACCGTGCAGCAGGCCTCGTTCACGGAAATGGAACGTTCGGCCTTCAACGGGCACAGCGCCGACCTG
GTCGCTCGTCTGCGCATCCGCCTGGCAGCCACTGGCGATGCCCTGTTCGGGCAGATGGACATGAACCGCCTGCGGTTCTT
CCTCGACGGCGAAGCGACCCTGATGCTGCAGCTGTACGAGCTGCTGTTCAACAACCTGGCCAAGGCCACGCTAAGCTTCG
ACGACCAGGGCCGCCGCCGCGAAGTGGCGCTGCCGGCCGATGCCCTGAACACCGTGGGCTACGCCCGTGACGAAGGCTTG
GTGGACTACTCCGAACGCTCATTCCTGGGCTACCGCCTGCTGCACGAGTATTTCACCTTCCCCGACAAGTTCATGTTCTT
CGACCTCAGTGGATTTGCCCGCATCCTGCAGGGCAAGGCCATCGAGCAGGTAGAGGTCAACTTCTATTTCTCCGACTATG
ACCTCAGCGAGCGCCTGGCGCGGCTGACCCAGAACATCGGGCGCAACAACTTCAAGCTCAACTGCACGCCGATCATCAAC
CTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTGACCCACACCCAGCACGAATACCCGGTCACCCCTGATACACGGCTGCA
CAACGCTGCAGAAGTGGTCTCGATCGACCGGGTACGGCGGGTGCGCAAACTCGGCGGTATCGACCAGGTCGCCACCTGCC
AGCCGTTTTTCGAACCCCGGGGCGAGCAAGACCCACACAGCAGCTTCTGGGTTGCGCGCCGGCGAAACCAGGGTGACGCC
ACTGCCATGAGCATCCGCGTGGTCGACCGCGATCTGGAACTGATCGACGCCAGCAGCGACACCCTCAGTATCGGCCTTAC
CTGCAGCAACCGCGACGTGCCGCTGATGCTGCCGTTCGGTGGGGAACGGGGCGATTTCACCATTCCCGCCAACTCGGTGA
TCAAGGATATCCGCTGCCTGCGCAAGCCCACCGCCACGGTGCGTGTGCCCTTGGGCAAGGGCCTGATCTGGCGGTTGATC
GCCCACCTGTCGCTGAACCATCTGTCGCTGGTCAGCCAGGGCCGGGAAGTGCTGCTGGAGCTGTTGTCGCTGTACAACTA
CCGCAATGTTTCCGCCATTCGCAAACAGATCAACGGCATCAAGGCGATCAGCAGCGAACCGGTGGTCGCGCGCATCGGCC
ACCCGCGGCCAAATTTCGTGCGCGGCGTCGGCATCACCCTGACCCTGGACGAAAGCCAGTTCATCGGCAGCGGCGTGTTT
CTGTTCGGCAAAGTGCTGGACCACTTCTTCGGCCAGTACTGCTCGATGAACAGCTTCACCCAACTGACCCTGCGCACCCA
ACAACGAGAAAAGAGAGTCGTACAATGGCCAGCACGCACCGGCGATCAGCCCCTGGTCTGA