Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00792  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii M2 |
| Replicon (GenBank) | chromosome (KC432605) |
| Location | 1..24537 |
| Function | anti-bacterial; effector translocation; adherence |
| Comment | The ability of Acinetobacter baumannii M2 to out-compete Escherichia coli was reliant upon the products of tssB and hcp. |
| References | [1] Carruthers MD et al (2013) Acinetobacter baumannii Utilizes a Type VI Secretion System for Bacterial Competition. PLoS One. 8(3):e59388. [PudMed:23527179] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| Locus_01 | 2..898 | + | 897 | 507480522 | transcriptional regulator LysR family | ||
| Locus_02 (asaA) | 1988..2668 | + | 681 | 507480523 | hypothetical protein | ||
| T6CP010989 | TssB | Locus_03 (tssB) | 2685..3188 | + | 504 | 507480524 | hypothetical protein |
| T6CP010990 | TssC | Locus_04 (tssC) | 3181..4662 | + | 1482 | 507480525 | hypothetical protein |
| T6CP010991 | TssD | Locus_05 (hcp) | 4712..5215 | + | 504 | 507480526 | hypothetical protein |
| T6CP010992 | TssE | Locus_06 (tssE) | 5295..5771 | + | 477 | 507480527 | hypothetical protein |
| T6CP010993 | TssF | Locus_07 (tssF) | 5788..7599 | + | 1812 | 507480528 | ImpG |
| T6CP010994 | TssG | Locus_08 (tssG) | 7563..8561 | + | 999 | 507480529 | hypothetical protein |
| Locus_09 (asaB) | 8558..9970 | + | 1413 | 507480530 | hypothetical protein | ||
| T6CP010995 | TssM | Locus_10 (tssM) | 10082..13840 | + | 3759 | 507480531 | hypothetical protein |
| Locus_11 (tagF) | 13878..14861 | + | 984 | 507480532 | hypothetical protein | ||
| T6CP011377 | TagL | Locus_12 (tagN) | 14839..15606 | + | 768 | 507480533 | outer membrane protein |
| T6CP011378 | PAAR | Locus_13 (asaC) | 15623..15886 | + | 264 | 507480534 | hypothetical protein |
| T6CP010996 | TssH | Locus_14 (tssH) | 16104..18788 | + | 2685 | 507480535 | ClpB |
| T6CP010997 | TssA | Locus_15 (tssA) | 18810..19904 | + | 1095 | 507480536 | hypothetical protein |
| T6CP010998 | TssK | Locus_16 (tssK) | 19921..21285 | + | 1365 | 507480537 | hypothetical protein |
| T6CP010999 | TssL | Locus_17 (tssL) | 21303..22109 | + | 807 | 507480538 | putative transmembrane protein |
| Locus_18 (asaD) | 22220..22720 | + | 501 | 507480539 | hypothetical protein | ||
| Locus_19 (asaE) | 22887..23681 | + | 795 | 507480540 | putative transmembrane protein | ||
| Locus_20 | 23686..24537 | - | 852 | 507480541 | transcriptional regulator LysR Family |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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