Detailed information of component protein


Summary

Component ID T6CP010997
Component protein type TssA
T6SS ID (Type) T6SS00792 experimental (Type i4b)
Strain Acinetobacter baumannii M2
Replicon chromosome
Sequence Protein sequence (365 a.a.); Nucleotide sequence (1095 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 18810..19904 (+)
NCBI ID 507480536
GenBank KC432605
Uniprot ID R9RIQ1_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 6.8e-34 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-364 MSIDISELLKPINDSLLCGEDYSFSNEFHEIKKARTEDDLLLDQGDWVAERKQADWDFVAKSVSNLLTEKTKDIRLLTWLIEAWTHLNGFEGMVKGLTLTHTMLNQYWQDIHPIIEDDDLDQRIGLLQGLINQLPGLLKKVSLTNTAPYYNLLDYDNFLYHENIRRKQTEEYDSQSGPSELEQFDQAIFNTSKTFQYSNYQEFTSVLTEWNVLKQTLDHLMGLDAPSFAANDSAFETIHSTLRKIYKAEAFGSGLAQTQEQAAVITTPSMENQVPVQIVSEQPMFQPQAQTHLANREQAMKVLQEIADYFQANEPHSPVSYMLQKTIKWSQMPLHEWLAQVIKDENPLQMVQEMLGVQPKNEYE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 365 a.a.    

>T6CP010997 KC432605:18810-19904 [Acinetobacter baumannii] [TssA]
MSIDISELLKPINDSLLCGEDYSFSNEFHEIKKARTEDDLLLDQGDWVAERKQADWDFVAKSVSNLLTEKTKDIRLLTWL
IEAWTHLNGFEGMVKGLTLTHTMLNQYWQDIHPIIEDDDLDQRIGLLQGLINQLPGLLKKVSLTNTAPYYNLLDYDNFLY
HENIRRKQTEEYDSQSGPSELEQFDQAIFNTSKTFQYSNYQEFTSVLTEWNVLKQTLDHLMGLDAPSFAANDSAFETIHS
TLRKIYKAEAFGSGLAQTQEQAAVITTPSMENQVPVQIVSEQPMFQPQAQTHLANREQAMKVLQEIADYFQANEPHSPVS
YMLQKTIKWSQMPLHEWLAQVIKDENPLQMVQEMLGVQPKNEYE*

  Nucleotide sequence: 1095 bp    

>T6CP010997 KC432605:18810-19904 [Acinetobacter baumannii] [TssA]
ATGAGTATTGATATTTCTGAACTACTTAAACCCATTAATGACAGCTTACTTTGTGGAGAGGATTATTCATTTTCTAATGA
ATTTCACGAAATAAAGAAAGCGAGAACTGAGGATGATCTATTATTAGATCAGGGGGATTGGGTTGCTGAGCGGAAACAGG
CAGATTGGGATTTTGTCGCAAAGAGCGTCAGTAATTTGCTCACAGAAAAAACCAAAGATATCCGTCTATTAACATGGTTA
ATAGAAGCCTGGACTCATCTAAATGGCTTTGAGGGTATGGTAAAGGGTTTAACTTTAACCCATACCATGCTGAACCAATA
TTGGCAGGATATTCATCCGATTATTGAAGATGATGATTTAGACCAACGTATTGGTTTATTACAAGGTTTAATTAATCAGT
TGCCTGGTTTGTTGAAGAAAGTATCTTTAACTAACACAGCGCCTTATTACAACTTACTTGATTACGATAATTTTCTATAC
CACGAAAACATTCGTCGTAAGCAAACAGAAGAGTACGACAGCCAATCAGGTCCATCTGAATTGGAACAATTTGATCAAGC
GATTTTTAATACGTCTAAAACCTTTCAATATTCAAATTATCAAGAGTTTACTTCAGTTCTAACGGAGTGGAATGTTTTAA
AACAGACGCTTGATCACTTAATGGGATTAGATGCACCAAGTTTTGCTGCAAATGATTCTGCATTTGAAACCATTCACAGC
ACCTTACGCAAGATTTATAAAGCAGAGGCTTTTGGTAGTGGGCTTGCCCAAACCCAAGAACAGGCCGCTGTTATTACGAC
TCCATCTATGGAAAATCAAGTGCCTGTACAAATCGTATCAGAACAGCCTATGTTTCAGCCTCAAGCACAAACTCACTTGG
CTAACCGTGAGCAAGCAATGAAAGTGCTACAAGAAATAGCCGATTATTTTCAGGCCAATGAACCACATAGTCCTGTGAGT
TATATGCTTCAAAAGACCATTAAATGGAGTCAAATGCCATTACATGAATGGTTGGCACAAGTCATTAAAGATGAAAATCC
ATTACAAATGGTTCAGGAAATGTTAGGTGTGCAGCCTAAAAATGAATATGAATAA