Detailed information of component protein


Summary

Component ID T6CP011378
Component protein type PAAR
T6SS ID (Type) T6SS00792 experimental (Type i4b)
Strain Acinetobacter baumannii M2
Replicon chromosome
Sequence Protein sequence (88 a.a.); Nucleotide sequence (264 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 15623..15886 (+)
NCBI ID 507480534
GenBank KC432605
Uniprot ID R9RIP5_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 8.1e-21 9..78
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-87 MASPYITIGCPTTGGGQVISGNSAFLIDGIAIACVGDKATCPAHKTVSTIVSGDPNMQVMGKSAARVNDSLSCGCKLLPKQSLVNQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9079 - -


  Protein sequence: 88 a.a.    

>T6CP011378 KC432605:15623-15886 [Acinetobacter baumannii] [PAAR]
MASPYITIGCPTTGGGQVISGNSAFLIDGIAIACVGDKATCPAHKTVSTIVSGDPNMQVMGKSAARVNDSLSCGCKLLPK
QSLVNQG*

  Nucleotide sequence: 264 bp    

>T6CP011378 KC432605:15623-15886 [Acinetobacter baumannii] [PAAR]
ATGGCTAGCCCTTATATTACGATTGGTTGCCCAACGACAGGTGGAGGGCAAGTCATTTCTGGTAATAGTGCATTTTTAAT
AGATGGAATTGCAATTGCGTGTGTAGGTGATAAAGCAACTTGTCCGGCGCATAAAACGGTTTCTACAATTGTTTCTGGAG
ATCCAAATATGCAAGTCATGGGAAAATCAGCAGCAAGAGTAAATGATTCATTATCTTGTGGTTGTAAATTATTACCGAAA
CAAAGTTTGGTTAATCAAGGATAG