Detailed information of component protein


Summary

Component ID T6CP010994
Component protein type TssG
T6SS ID (Type) T6SS00792 experimental (Type i4b)
Strain Acinetobacter baumannii M2
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 7563..8561 (+)
NCBI ID 507480529
GenBank KC432605
Uniprot ID R9RIP0_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.6e-65 20..311
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MQSERWWQDSSITAELFQRPKSFEFIQATRLLRHSPANDSFSSWTDHFKFETSFNLNFPATEIESLELVDERVHLTNLIVGLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQQQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFIQESFKLASDQLTTLGGSQPSLLGINTFCGETIQQIDGKIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPIRLTQSEESGLGQGAFLMSRKPSTHSHETCYSLIGEQI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -


  Protein sequence: 333 a.a.    

>T6CP010994 KC432605:7563-8561 [Acinetobacter baumannii] [TssG]
MQSERWWQDSSITAELFQRPKSFEFIQATRLLRHSPANDSFSSWTDHFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFIQESFKLASDQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPIRLTQSEESGLGQGAFLMSRKPSTHS
HETCYSLIGEQI*

  Nucleotide sequence: 999 bp    

>T6CP010994 KC432605:7563-8561 [Acinetobacter baumannii] [TssG]
ATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTATAACGGCTGAGTTATTTCAACGCCCTAAATCTTTTGAATTTATTCA
AGCAACACGGTTATTGCGTCATAGCCCAGCTAATGATTCTTTTTCGTCGTGGACTGATCATTTTAAGTTTGAGACCTCAT
TTAACTTAAACTTTCCGGCCACTGAGATTGAAAGTTTAGAATTAGTAGATGAGCGTGTTCATTTAACAAACTTGATTGTT
GGTCTTACTGGTATACAAGGTGCATTACCTTATACCTATACAAATAAAATTAAACAGGCTCCACGGCAGCAACGCGCTGA
AACTAAAGAGTTTTTGAGTTTATTTAATCATAAGTTAACGAGTCAGTATGTCGAGTCAAGTATTACTTATCACTTGCCTG
TGCGATATGAAATAGAAAATAAAAATGATTATTTAGATATTCTGCATGCTTTAAATGGTTATGTGAGATCACAACATCAA
CAACAAGATTTAGATGAATATTTTGCCGAATTTTCAGGCTTAATGCAGGGGCAAAATAATACTGTTCATGCTTTGAAGAC
TATGTTGAGTTGTATATTTAAGCATGAAATTACAATTAAAGAGTTCATACAAGAATCATTTAAGTTAGCAAGTGATCAGT
TAACAACTTTGGGCGGAAGCCAGCCTAGCTTACTTGGTATAAATACGTTTTGTGGAGAAACGATTCAACAAATTGATGGA
AAAATTGAGATTCAGATTGGTCCGCTTAAGCGTCAGCAATATTTAAAGTTTTTACCTCATCAAGAGCTTAGTTTAAAGCT
CAAAAAAATTGTAGAAACATGGTGCAGTCCAACTCTATCAATCGATTTAAGATTGATATTGGATGAGTCGGAAATACAAC
CCATTCGCCTAACTCAAAGCGAAGAAAGTGGCTTAGGGCAAGGTGCTTTTTTAATGTCTCGCAAGCCTAGTACACATAGC
CATGAAACATGTTATAGCCTTATTGGAGAGCAAATATGA