Detailed information of component protein


Summary

Component ID T6CP010998
Component protein type TssK
T6SS ID (Type) T6SS00792 experimental (Type i4b)
Strain Acinetobacter baumannii M2
Replicon chromosome
Sequence Protein sequence (455 a.a.); Nucleotide sequence (1365 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 19921..21285 (+)
NCBI ID 507480537
GenBank KC432605
Uniprot ID R9RHI9_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.5e-126 19..451
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-454 MFKAEKVLWGEGLFLRPQHFQIQDTYHEQRLNHTVRAVVPFSYGVQKLSFDEAQLSTHILALETVEMIWQDGEIYQAPAYDLLPEPILLDELNLRGEMVIYLALPLLQANKQNLIDQNQSQKGRYQSHLVETHDLFTNATEADISLLRRRAVFKLLDVNSNPDHNLDGFLYLPIGKIKRQSSGAFEIDRKFIPPILHVDASETLVSNLKRTLNVIKAKIKTIQTNNRENEQKLIEFRSGDIVSFWLVNALNTAHAGLNHFLQYPQIHPERLFFELLRLAGSLLTFSTAYEVDQLPAYKHHNLQESFTQLDTILRDLLDTIISSRYISIALKEIRPSYWVGSLETDKITRDTRLYIAVSSSAMQTHELIQIVPLRFKIGSTLDVEQRVVAALPAIPLHHLIQVPTAIPVRSGVSYFEIEPHHELYQRMLDSETICIYVPAGFQDISIELIAVMNA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 455 a.a.    

>T6CP010998 KC432605:19921-21285 [Acinetobacter baumannii] [TssK]
MFKAEKVLWGEGLFLRPQHFQIQDTYHEQRLNHTVRAVVPFSYGVQKLSFDEAQLSTHILALETVEMIWQDGEIYQAPAY
DLLPEPILLDELNLRGEMVIYLALPLLQANKQNLIDQNQSQKGRYQSHLVETHDLFTNATEADISLLRRRAVFKLLDVNS
NPDHNLDGFLYLPIGKIKRQSSGAFEIDRKFIPPILHVDASETLVSNLKRTLNVIKAKIKTIQTNNRENEQKLIEFRSGD
IVSFWLVNALNTAHAGLNHFLQYPQIHPERLFFELLRLAGSLLTFSTAYEVDQLPAYKHHNLQESFTQLDTILRDLLDTI
ISSRYISIALKEIRPSYWVGSLETDKITRDTRLYIAVSSSAMQTHELIQIVPLRFKIGSTLDVEQRVVAALPAIPLHHLI
QVPTAIPVRSGVSYFEIEPHHELYQRMLDSETICIYVPAGFQDISIELIAVMNA*

  Nucleotide sequence: 1365 bp    

>T6CP010998 KC432605:19921-21285 [Acinetobacter baumannii] [TssK]
ATGTTTAAAGCTGAAAAAGTCCTGTGGGGCGAAGGTTTATTTTTAAGACCTCAACATTTCCAAATTCAAGATACCTATCA
TGAACAACGCTTAAATCACACTGTTCGTGCTGTTGTGCCGTTTTCATATGGTGTTCAAAAATTAAGTTTTGATGAAGCAC
AGCTTAGTACACATATTCTTGCGCTTGAAACGGTAGAAATGATTTGGCAAGACGGTGAAATATATCAGGCACCGGCTTAC
GATTTATTACCTGAACCAATTTTGCTTGATGAGCTTAATTTACGTGGTGAAATGGTCATCTATTTGGCATTACCATTATT
ACAAGCCAATAAACAGAATTTAATTGATCAGAATCAATCACAGAAGGGGCGTTATCAATCACATTTGGTTGAGACCCACG
ATCTGTTCACAAATGCGACAGAAGCAGATATCAGTTTGTTACGTCGTCGAGCTGTGTTTAAATTATTAGATGTGAACAGC
AATCCTGATCATAATCTGGATGGTTTTCTTTATTTGCCAATAGGTAAAATCAAACGTCAGAGTTCAGGTGCTTTTGAAAT
TGATCGTAAATTTATTCCACCTATTTTGCATGTCGATGCATCTGAGACATTAGTTTCGAATTTAAAAAGAACATTGAATG
TTATTAAGGCAAAAATTAAAACCATTCAAACCAACAACCGTGAAAATGAACAGAAATTAATTGAATTCCGTTCAGGTGAT
ATCGTTTCGTTTTGGTTAGTCAATGCTTTAAACACTGCACATGCTGGTCTGAATCATTTCCTGCAATATCCACAAATTCA
TCCGGAACGATTGTTTTTTGAATTATTGCGTTTAGCGGGCTCATTATTAACTTTTTCGACAGCTTATGAAGTTGATCAGT
TACCGGCCTATAAACATCACAATTTGCAAGAGAGCTTTACTCAGCTCGACACCATTTTGCGTGATTTATTAGATACCATT
ATTTCTAGTCGCTACATCAGTATTGCCCTTAAAGAAATTCGACCTTCATATTGGGTGGGAAGCCTCGAGACAGATAAGAT
TACTCGTGATACTAGACTTTATATAGCCGTATCTAGCAGTGCAATGCAGACTCACGAGTTGATTCAGATTGTACCTCTAC
GGTTTAAAATCGGTAGTACGCTGGATGTTGAACAGCGTGTTGTTGCAGCATTACCAGCCATTCCATTACACCACTTAATT
CAAGTTCCAACGGCTATTCCAGTGCGTTCTGGCGTGAGCTATTTCGAAATCGAACCGCATCATGAACTCTATCAGCGCAT
GTTAGATTCAGAGACGATTTGTATTTACGTTCCAGCGGGCTTCCAAGATATCAGTATTGAGCTGATTGCGGTCATGAACG
CTTAA