Detailed information of component protein
Summary
| Component ID | T6CP011377 |
| Component protein type | TagL |
| T6SS ID (Type) | T6SS00792  (Type i4b) |
| Strain | Acinetobacter baumannii M2 |
| Replicon | chromosome |
| Sequence | Protein sequence (256 a.a.); Nucleotide sequence (768 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 14839..15606 (+) |
| NCBI ID | 507480533 |
| GenBank | KC432605 |
| Uniprot ID | R9RHJ8_ACIBA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| OmpA | PF00691.22 | 1e-23 | 154..248 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-255 | MNQKYQIKLSQLIKGCFIYAIANYALAQPIVVEGVVPNEASKQAILMKMQSVYGADQVVDKIQVRPVAAPNGWSDSVTRVITPDLKKVSQGKLSVNGTRFELTGKMLNPTEIQPTIQIFQGLVQPPYQLFSQLSVNQAEQKVIDDALKNRIIEFESGSAVLTDAGQKILDEMAVALNKVGGKKVKIVGHTDSSGDATKNLKLSQDRALAVKNYLVSKNIPADHLSAEGLGSTKPVADNTSPEGRKKNRRIEFTVL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.7766 | pos: 27-28. ALA-QP. | MNQKYQIKLSQLIKGCFIYAIANYALA |
Protein sequence: 256 a.a.
>T6CP011377 KC432605:14839-15606 [Acinetobacter baumannii] [TagL]
MNQKYQIKLSQLIKGCFIYAIANYALAQPIVVEGVVPNEASKQAILMKMQSVYGADQVVDKIQVRPVAAPNGWSDSVTRV
ITPDLKKVSQGKLSVNGTRFELTGKMLNPTEIQPTIQIFQGLVQPPYQLFSQLSVNQAEQKVIDDALKNRIIEFESGSAV
LTDAGQKILDEMAVALNKVGGKKVKIVGHTDSSGDATKNLKLSQDRALAVKNYLVSKNIPADHLSAEGLGSTKPVADNTS
PEGRKKNRRIEFTVL*
MNQKYQIKLSQLIKGCFIYAIANYALAQPIVVEGVVPNEASKQAILMKMQSVYGADQVVDKIQVRPVAAPNGWSDSVTRV
ITPDLKKVSQGKLSVNGTRFELTGKMLNPTEIQPTIQIFQGLVQPPYQLFSQLSVNQAEQKVIDDALKNRIIEFESGSAV
LTDAGQKILDEMAVALNKVGGKKVKIVGHTDSSGDATKNLKLSQDRALAVKNYLVSKNIPADHLSAEGLGSTKPVADNTS
PEGRKKNRRIEFTVL*
Nucleotide sequence: 768 bp
>T6CP011377 KC432605:14839-15606 [Acinetobacter baumannii] [TagL]
ATGAATCAAAAATATCAAATTAAACTTTCACAATTAATAAAAGGCTGTTTTATTTATGCGATTGCAAATTATGCTTTAGC
ACAGCCAATTGTTGTTGAAGGTGTCGTGCCAAATGAAGCGAGTAAACAGGCCATTTTAATGAAAATGCAGTCTGTTTATG
GTGCAGACCAAGTGGTAGATAAAATACAAGTTCGACCAGTAGCAGCTCCAAATGGCTGGAGTGACTCTGTAACAAGAGTG
ATTACACCAGACCTTAAAAAAGTTTCTCAGGGCAAGTTAAGTGTTAACGGCACGCGATTTGAACTGACTGGAAAAATGCT
AAATCCTACAGAAATACAACCAACTATTCAGATATTTCAGGGTTTAGTACAGCCACCATATCAATTATTTTCACAGCTTT
CTGTAAATCAGGCTGAGCAGAAAGTCATTGATGATGCTTTAAAAAATCGAATTATTGAATTTGAATCTGGTAGTGCAGTG
CTCACAGATGCTGGCCAAAAAATTCTTGATGAAATGGCGGTTGCTTTAAATAAAGTTGGCGGTAAAAAAGTCAAAATTGT
AGGACATACTGATAGTTCTGGAGATGCGACTAAAAACTTAAAACTCAGTCAAGACCGTGCATTAGCAGTTAAAAATTATT
TGGTGAGTAAGAACATTCCTGCTGATCATTTGTCTGCAGAAGGACTAGGTTCGACTAAACCTGTAGCAGATAATACGTCT
CCAGAAGGCAGAAAGAAAAACCGTCGAATTGAGTTCACCGTTTTATAA
ATGAATCAAAAATATCAAATTAAACTTTCACAATTAATAAAAGGCTGTTTTATTTATGCGATTGCAAATTATGCTTTAGC
ACAGCCAATTGTTGTTGAAGGTGTCGTGCCAAATGAAGCGAGTAAACAGGCCATTTTAATGAAAATGCAGTCTGTTTATG
GTGCAGACCAAGTGGTAGATAAAATACAAGTTCGACCAGTAGCAGCTCCAAATGGCTGGAGTGACTCTGTAACAAGAGTG
ATTACACCAGACCTTAAAAAAGTTTCTCAGGGCAAGTTAAGTGTTAACGGCACGCGATTTGAACTGACTGGAAAAATGCT
AAATCCTACAGAAATACAACCAACTATTCAGATATTTCAGGGTTTAGTACAGCCACCATATCAATTATTTTCACAGCTTT
CTGTAAATCAGGCTGAGCAGAAAGTCATTGATGATGCTTTAAAAAATCGAATTATTGAATTTGAATCTGGTAGTGCAGTG
CTCACAGATGCTGGCCAAAAAATTCTTGATGAAATGGCGGTTGCTTTAAATAAAGTTGGCGGTAAAAAAGTCAAAATTGT
AGGACATACTGATAGTTCTGGAGATGCGACTAAAAACTTAAAACTCAGTCAAGACCGTGCATTAGCAGTTAAAAATTATT
TGGTGAGTAAGAACATTCCTGCTGATCATTTGTCTGCAGAAGGACTAGGTTCGACTAAACCTGTAGCAGATAATACGTCT
CCAGAAGGCAGAAAGAAAAACCGTCGAATTGAGTTCACCGTTTTATAA