Detailed information of component protein
Summary
| Component ID | T6CP010999 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00792  (Type i4b) |
| Strain | Acinetobacter baumannii M2 |
| Replicon | chromosome |
| Sequence | Protein sequence (269 a.a.); Nucleotide sequence (807 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 21303..22109 (+) |
| NCBI ID | 507480538 |
| GenBank | KC432605 |
| Uniprot ID | R9RHK3_ACIBA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2.1e-51 | 35..237 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-216 | MSQSTGAPSLFDDGQIGTGGNNNSQSQAKLQAINLIDLLHDGFYLIFLIRNQYVPADPQRFREKILDLLNRFEQQAKKLQFSADDIHDAKYAFCALIDETIVTQQDPSYFNLQNAWLISPLQLSLFGSQLAGYQFFEILEQLRSRGKDRLAALEVFHYCLLLGFQGKYRIESIESLNHLVARVGDEIDYLKGKKVAFSPFSAIPDQIRNIIHRELP |
| Transmembrane helix | 217-239 | FFWILIFLLIFALLTFAGLRFML |
| Inside | 240-268 | NNQNDKALSTYQNVISAPQEQAHITIYLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9852 | - | - |
Protein sequence: 269 a.a.
>T6CP010999 KC432605:21303-22109 [Acinetobacter baumannii] [TssL]
MSQSTGAPSLFDDGQIGTGGNNNSQSQAKLQAINLIDLLHDGFYLIFLIRNQYVPADPQRFREKILDLLNRFEQQAKKLQ
FSADDIHDAKYAFCALIDETIVTQQDPSYFNLQNAWLISPLQLSLFGSQLAGYQFFEILEQLRSRGKDRLAALEVFHYCL
LLGFQGKYRIESIESLNHLVARVGDEIDYLKGKKVAFSPFSAIPDQIRNIIHRELPFFWILIFLLIFALLTFAGLRFMLN
NQNDKALSTYQNVISAPQEQAHITIYLP*
MSQSTGAPSLFDDGQIGTGGNNNSQSQAKLQAINLIDLLHDGFYLIFLIRNQYVPADPQRFREKILDLLNRFEQQAKKLQ
FSADDIHDAKYAFCALIDETIVTQQDPSYFNLQNAWLISPLQLSLFGSQLAGYQFFEILEQLRSRGKDRLAALEVFHYCL
LLGFQGKYRIESIESLNHLVARVGDEIDYLKGKKVAFSPFSAIPDQIRNIIHRELPFFWILIFLLIFALLTFAGLRFMLN
NQNDKALSTYQNVISAPQEQAHITIYLP*
Nucleotide sequence: 807 bp
>T6CP010999 KC432605:21303-22109 [Acinetobacter baumannii] [TssL]
ATGTCACAATCTACAGGTGCTCCTTCTTTATTTGATGATGGGCAAATCGGGACAGGGGGAAATAATAATAGCCAGTCCCA
AGCAAAACTACAGGCGATTAATCTGATCGATTTATTGCACGATGGTTTTTATTTAATCTTTTTGATTCGAAATCAGTATG
TGCCAGCTGACCCGCAGCGGTTTCGTGAAAAGATTTTAGATTTGCTTAATCGATTTGAACAACAAGCTAAAAAGTTGCAG
TTTTCAGCAGATGATATTCATGATGCTAAATATGCATTTTGTGCATTGATTGATGAAACAATCGTGACCCAACAAGACCC
AAGCTATTTTAATTTGCAAAATGCTTGGTTGATTAGTCCGTTGCAATTGAGCTTATTTGGTTCTCAATTGGCGGGTTATC
AGTTCTTCGAAATATTAGAACAGCTGAGAAGCCGTGGAAAAGATCGTTTAGCTGCTCTTGAAGTATTCCATTACTGTCTA
TTATTAGGTTTTCAGGGTAAATATCGAATTGAGTCTATCGAAAGCTTAAATCATTTGGTTGCGCGAGTAGGTGACGAAAT
TGATTATTTAAAAGGTAAAAAAGTTGCTTTTTCGCCGTTCTCGGCAATTCCCGATCAGATACGAAATATTATTCATCGCG
AATTACCTTTTTTCTGGATTTTGATTTTCTTATTGATTTTTGCATTGCTTACCTTCGCGGGTCTAAGATTTATGTTGAAC
AATCAAAATGATAAAGCATTATCTACTTATCAAAATGTGATTTCTGCCCCACAAGAGCAGGCACATATTACAATTTATTT
ACCTTGA
ATGTCACAATCTACAGGTGCTCCTTCTTTATTTGATGATGGGCAAATCGGGACAGGGGGAAATAATAATAGCCAGTCCCA
AGCAAAACTACAGGCGATTAATCTGATCGATTTATTGCACGATGGTTTTTATTTAATCTTTTTGATTCGAAATCAGTATG
TGCCAGCTGACCCGCAGCGGTTTCGTGAAAAGATTTTAGATTTGCTTAATCGATTTGAACAACAAGCTAAAAAGTTGCAG
TTTTCAGCAGATGATATTCATGATGCTAAATATGCATTTTGTGCATTGATTGATGAAACAATCGTGACCCAACAAGACCC
AAGCTATTTTAATTTGCAAAATGCTTGGTTGATTAGTCCGTTGCAATTGAGCTTATTTGGTTCTCAATTGGCGGGTTATC
AGTTCTTCGAAATATTAGAACAGCTGAGAAGCCGTGGAAAAGATCGTTTAGCTGCTCTTGAAGTATTCCATTACTGTCTA
TTATTAGGTTTTCAGGGTAAATATCGAATTGAGTCTATCGAAAGCTTAAATCATTTGGTTGCGCGAGTAGGTGACGAAAT
TGATTATTTAAAAGGTAAAAAAGTTGCTTTTTCGCCGTTCTCGGCAATTCCCGATCAGATACGAAATATTATTCATCGCG
AATTACCTTTTTTCTGGATTTTGATTTTCTTATTGATTTTTGCATTGCTTACCTTCGCGGGTCTAAGATTTATGTTGAAC
AATCAAAATGATAAAGCATTATCTACTTATCAAAATGTGATTTCTGCCCCACAAGAGCAGGCACATATTACAATTTATTT
ACCTTGA