Detailed information of component protein


Summary

Component ID T6CP010993
Component protein type TssF
T6SS ID (Type) T6SS00792 experimental (Type i4b)
Strain Acinetobacter baumannii M2
Replicon chromosome
Sequence Protein sequence (604 a.a.); Nucleotide sequence (1812 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5788..7599 (+)
NCBI ID 507480528
GenBank KC432605
Uniprot ID R9RHJ4_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.4e-146 3..599
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-603 VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMFPQYLRHFPACSVVSFEDINKIKQLTEPHLVPDHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNATLSLKFEIFNSAHACLIHEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKHGQTIVELGKNPFELIGFSEQESLLPLDQHTHHAYRLLMEYFCFPEKFSYLKLDLDFLKGLPQQVSEFELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAEPQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMGYSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSLNSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFSQLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCSQNVGGKTLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 604 a.a.    

>T6CP010993 KC432605:5788-7599 [Acinetobacter baumannii] [TssF]
VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMF
PQYLRHFPACSVVSFEDINKIKQLTEPHLVPDHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNA
TLSLKFEIFNSAHACLIHEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKHGQTIVELGKNPFELIGFSEQESLLPLDQHT
HHAYRLLMEYFCFPEKFSYLKLDLDFLKGLPQQVSEFELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAE
PQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMG
YSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSL
NSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFS
QLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCSQNVGGKTLL*

  Nucleotide sequence: 1812 bp    

>T6CP010993 KC432605:5788-7599 [Acinetobacter baumannii] [TssF]
GTGATAGAAGAGCTTTTACCGTTTTATGAAAAACAATTACAAGAATTTGGTCAGCAATCTCGAGAATTTGCCCAAAAATA
TCCAAAAATTGCTCAGCGCTTATCTTTAAATCAAGAGCAAATTGATGACCCGCATATTGAACGTCTGATACAGGCTTTTT
CGCTGATTGCCGCTCGAATCGATAAAAAACTTACAGACAGTTATGATGTTTTTACTCGTTCTTTATTTGAGGTGATGTTT
CCTCAATACTTGCGTCATTTTCCTGCTTGTTCAGTTGTTAGCTTTGAAGATATTAATAAAATCAAACAGCTTACAGAGCC
TCATCTTGTACCTGACCATACGGTTTTGAAGTCTCGTAGTTTCAAGGGAGTACAGTGTGAGTTTAATACAACTCAAGATG
TTAAATTACTACCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAACCAAAATGCG
ACGTTGAGCCTTAAATTTGAAATTTTCAATAGTGCTCATGCATGCTTAATTCATGAGAAGCTTCCTATTTATTTGGATGC
TATCTCCAATTTTCCTTTACAAGTACTTGATAGTATTTTCAAAAAAGGGACCAGTTTTGCGGTTAAACATGGTCAAACGA
TTGTCGAGTTGGGTAAGAATCCATTCGAGTTAATAGGTTTTTCTGAACAAGAAAGTTTATTACCCCTCGATCAACATACG
CATCATGCTTATCGTTTATTAATGGAGTATTTTTGTTTCCCAGAAAAGTTTAGCTACCTGAAACTTGATTTAGATTTTTT
AAAAGGGTTACCTCAGCAAGTATCTGAATTTGAGCTTTTAATTCATTTTAAATTAAATTTAAACGATCAAGCCGTTGTTA
GAAACTATTCTGAATTAAATATTGCAAACTTTAAATTGTTTACTACCCCAGTAATCAACCTGTTTGAAAAATATGCGGAA
CCTCAAAAAATAGTTCATAAGCAACTCGAATATCCACTCGTTACAGACGCTCACCATCCTGAATTTTATCAAGTATATTC
AATACTTGAGATGAATATGGTGCGTGAAAAAACAAATCAGGAAGAAAGCTATGTTCCTGTTTTACCATTTTTTGCGATGA
GCCATTATCACAATGATACAGCTCGCTTTTTTTATTCAGTGAATTATCAAAAGTTACAGTCTAATTTTGTTGAAATGGGC
TATTCCATTATTTCTAAAAATCTAAATCCATTTTCAACACGTTCAGATTTTATTAGCACCAAATTATTATGTTCAAACCG
TGACTTGCCTCATGAAGCACTGGGACAGTCTAATAACGTATTAAATTTAAATGATAGTAGCTTGGCTAGACGTGCCATTG
TTTTAAAACGGCCAACAAAGCCTTATAAGTTTGAACAAGGCCAAAGTGAGCAATGGCGTGTGATTTCGCATCTTTCATTA
AATAGCTTAGCGCTTATGAAAGGGGATGCTGTTTCTCATGTTAAAGAGCTGTTGGCTTTATATAACTTACCGCAGTCAAA
AGAAAATTATTTAATTATTGAATCAATTAAAAAATTAGAATTTTCACTTACCCATAAACTTGTAGATGGCAAACCATTTC
CAATGTTTGTGAGAGGGGTAAAAGCTGAATTGCAAATTGATTCATCAGTGTTTAGAGGGCACAGCTTATATATTTTTAGT
CAACTATTAAGTCGTGTTTTTAATTTAAAGGTTCAAATTAATAGTTTTGTTGATTTGGTGGTTAAGGATTATTCATCTCA
GCAGGAGTTATACCAATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTATAA