Detailed information of component protein
Summary
| Component ID | T6CP010989 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00792  (Type i4b) |
| Strain | Acinetobacter baumannii M2 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 2685..3188 (+) |
| NCBI ID | AGM48618.1 |
| GenBank | KC432605 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1e-59 | 12..164 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-167 | MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPRAAFQVDNTLTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKLSAEADHE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9973 | - | - |
Protein sequence: 168 a.a.
>T6CP010989 KC432605:2685-3188 [Acinetobacter baumannii] [TssB]
MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPR
AAFQVDNTLTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKL
SAEADHE*
MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPR
AAFQVDNTLTEEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKL
SAEADHE*
Nucleotide sequence: 504 bp
>T6CP010989 KC432605:2685-3188 [Acinetobacter baumannii] [TssB]
ATGGCTAAAAGAGAAAGCGTACAAAAGAAGCTTCAACGAATTCGACCTCCTCGTGTTCAGCTTACTTACGATGTTGAAAT
TGGTGATGCAAAAGAAGCGAAAGAACTCCCGTTTGTTGTTGGTGTGATGGGTGACTTTTCTGCAGCATCTGAGCTTGAAC
GTACAAAGTTAAAAGATAAAAAATTTATTAACGTAGATTTAGATAATATCGATGAAGTAATGGAGTCGTTATCTCCAAGA
GCTGCTTTTCAGGTAGATAATACGCTAACTGAAGAGGGTGGGAAGATGGCTGTTGATTTAACATTTAAGTCAATGGAAGA
TTTCCGTCCTGAAAATGTTGTTCAACAAGTTGATCCATTAAAGAAATTAGTGGAAGCGCGTGAACGTTTAACTGATTTAA
GAAATAAAATTTCTAACAGTGAACGTTTAGAAGATTTGCTTGATGAGGTTCTTAAAAATACTGATCAGATTCGTAAATTA
AGTGCGGAGGCTGACCATGAATAA
ATGGCTAAAAGAGAAAGCGTACAAAAGAAGCTTCAACGAATTCGACCTCCTCGTGTTCAGCTTACTTACGATGTTGAAAT
TGGTGATGCAAAAGAAGCGAAAGAACTCCCGTTTGTTGTTGGTGTGATGGGTGACTTTTCTGCAGCATCTGAGCTTGAAC
GTACAAAGTTAAAAGATAAAAAATTTATTAACGTAGATTTAGATAATATCGATGAAGTAATGGAGTCGTTATCTCCAAGA
GCTGCTTTTCAGGTAGATAATACGCTAACTGAAGAGGGTGGGAAGATGGCTGTTGATTTAACATTTAAGTCAATGGAAGA
TTTCCGTCCTGAAAATGTTGTTCAACAAGTTGATCCATTAAAGAAATTAGTGGAAGCGCGTGAACGTTTAACTGATTTAA
GAAATAAAATTTCTAACAGTGAACGTTTAGAAGATTTGCTTGATGAGGTTCTTAAAAATACTGATCAGATTCGTAAATTA
AGTGCGGAGGCTGACCATGAATAA