Detailed information of component protein


Summary

Component ID T6CP010990
Component protein type TssC
T6SS ID (Type) T6SS00792 experimental (Type i4b)
Strain Acinetobacter baumannii M2
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 3181..4662 (+)
NCBI ID 507480525
GenBank KC432605
Uniprot ID R9RFN4_ACIBA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.5e-136 66..368
VipB_2 PF18945.2 6e-45 378..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MNNTQSAAMPLVENEEFNLLDSIVEQSRIARNEEEHSRAKSLIGELAKEVMAGTITVSENMTLSIDKRIAEIDALISSQLSQIMHNEQFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKELVKDFQGATDFDQSTLFKKIYEEEYGSFGGAPYSALIGDFEFDRTPSDMYLLEQISHVAAAAHAPFVSAASPSILGLESFTDIDRPRDVSKIFETAEYVQWRSFRDSEDSRYVALTLPHVLGRLPYHPKEGTATEGFNFIEDVSGENHNEYLWMNAAYAFGTRLTNAFDMHGWCAAIRGVEGGGLVEGLPVHTFKTQDGEVVFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPKKYDNDTANANSALSSQIQYIMAVSRIAHYLKAMMRDKVGSFASAGNVEAFLNEWLSQYVLLDDGASQEAKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSVSLRLVTELPQSSN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9861 - -


  Protein sequence: 494 a.a.    

>T6CP010990 KC432605:3181-4662 [Acinetobacter baumannii] [TssC]
MNNTQSAAMPLVENEEFNLLDSIVEQSRIARNEEEHSRAKSLIGELAKEVMAGTITVSENMTLSIDKRIAEIDALISSQL
SQIMHNEQFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKELVKDFQGATDFDQSTLFKKIYEEEYGSFGGAPYSALI
GDFEFDRTPSDMYLLEQISHVAAAAHAPFVSAASPSILGLESFTDIDRPRDVSKIFETAEYVQWRSFRDSEDSRYVALTL
PHVLGRLPYHPKEGTATEGFNFIEDVSGENHNEYLWMNAAYAFGTRLTNAFDMHGWCAAIRGVEGGGLVEGLPVHTFKTQ
DGEVVFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPKKYDNDTANANSALSSQIQYIMAVSRIAHY
LKAMMRDKVGSFASAGNVEAFLNEWLSQYVLLDDGASQEAKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSV
SLRLVTELPQSSN*

  Nucleotide sequence: 1482 bp    

>T6CP010990 KC432605:3181-4662 [Acinetobacter baumannii] [TssC]
ATGAATAATACTCAATCAGCAGCGATGCCACTTGTTGAAAATGAAGAATTTAATCTTTTAGATTCGATTGTTGAACAAAG
TCGCATTGCACGAAATGAAGAAGAACATTCACGTGCTAAAAGTTTAATTGGTGAACTTGCCAAAGAAGTAATGGCTGGAA
CCATTACTGTTTCTGAAAATATGACTTTATCAATTGATAAGCGTATTGCAGAAATCGATGCGCTGATTTCAAGTCAGTTA
AGTCAGATTATGCACAATGAACAATTTCAAAAAATTGAATCAACGTGGCGTGGTCTTTATTACTTCTGCCAAGAAACACC
TTCAAATCCGCTCATTAAAATTCGTATGTTAAATACAACAAAGAAAGAGTTGGTAAAAGATTTTCAGGGTGCTACAGATT
TTGATCAAAGCACTTTATTTAAGAAAATCTATGAAGAAGAATATGGCTCTTTTGGTGGTGCACCATACTCAGCATTAATT
GGTGATTTTGAGTTTGACCGCACGCCATCTGACATGTATTTGCTTGAACAAATTTCTCATGTTGCTGCAGCAGCGCATGC
ACCATTTGTTTCGGCTGCTAGCCCAAGCATTTTAGGCCTTGAGTCATTTACAGATATTGATCGTCCTAGAGATGTTTCAA
AAATCTTTGAAACTGCTGAATATGTTCAATGGCGTTCTTTCCGTGACAGTGAAGATTCACGTTATGTTGCATTGACGTTG
CCGCATGTTTTAGGTCGTCTCCCATATCATCCAAAAGAAGGCACTGCGACAGAAGGCTTTAATTTTATTGAAGATGTTTC
TGGTGAAAATCACAATGAATATTTGTGGATGAATGCAGCTTATGCTTTTGGTACTCGTTTAACAAATGCATTTGATATGC
ATGGTTGGTGTGCTGCTATTCGTGGTGTTGAAGGTGGTGGTTTGGTTGAAGGTTTACCAGTCCATACATTTAAAACACAA
GATGGTGAAGTAGTATTTAAGTGTCCAACTGAAATTGCAATTACAGATCGTCGTGAGAAAGAGCTAAGCGATCTAGGCTT
TATTCCATTAGTACATTGTAAAAATACAGATTACGCAGCTTTCTTTGGTGCGCAATCAACTCAAAAACCTAAAAAATATG
ACAACGATACTGCCAACGCAAACTCGGCTTTATCAAGTCAAATTCAGTACATCATGGCTGTTTCACGTATTGCACATTAC
TTAAAAGCAATGATGCGAGATAAAGTGGGTAGTTTTGCTTCTGCTGGTAATGTTGAAGCATTTTTAAACGAGTGGTTGTC
ACAGTATGTATTACTTGATGATGGCGCTTCTCAAGAAGCAAAAGCTCAATACCCATTACGTGAAGCGTCTGTAAAAGTTG
TAGAAGATCCTGCTCAACCAGGTCACTACAAATCTGTGGTTTTCTTGCGACCACATTTCCAGCTGGATGAGTTGTCGGTT
TCTTTACGACTTGTCACTGAGTTGCCTCAGTCCTCAAATTAA