Detailed information of component protein
Summary
| Component ID | T6CP010992 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00792  (Type i4b) |
| Strain | Acinetobacter baumannii M2 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 5295..5771 (+) |
| NCBI ID | 507480527 |
| GenBank | KC432605 |
| Uniprot ID | R9RHI3_ACIBA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 4.7e-17 | 34..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVVDDYPLVKKSILQFGIIDFVGLSTANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9963 | - | - |
Protein sequence: 159 a.a.
>T6CP010992 KC432605:5295-5771 [Acinetobacter baumannii] [TssE]
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVVDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVVDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*
Nucleotide sequence: 477 bp
>T6CP010992 KC432605:5295-5771 [Acinetobacter baumannii] [TssE]
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTAGTTGATGACTATCCACTTGTAAAGAAATCGATACTTCAGTTTGGGATTATTGATTTTGTAGGGCTCTCT
ACAGCCAACCCTTTAGACCGAGATAAAATTTGCCAATCCATTGAGCAATCCATAGCAGCTCATGAGCCTCGGCTAAGACA
AATACGGGTAGAGATGTTGTTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CTCTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAGTATGTAATTTCAGCGAGAACTTAA
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTAGTTGATGACTATCCACTTGTAAAGAAATCGATACTTCAGTTTGGGATTATTGATTTTGTAGGGCTCTCT
ACAGCCAACCCTTTAGACCGAGATAAAATTTGCCAATCCATTGAGCAATCCATAGCAGCTCATGAGCCTCGGCTAAGACA
AATACGGGTAGAGATGTTGTTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CTCTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAGTATGTAATTTCAGCGAGAACTTAA