Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01283  |
| T6SS type | Type i2 |
| Strain | Kosakonia oryzae strain KO348 |
| Replicon (RefSeq) | chromosome (NZ_JZLI01000015) |
| Location | 107454..120808 |
| Function | anti-bacterial; anti-adverse environment |
| Comment | There is a significant role for T6SS in the rhizoplane colonization and to a much lesser extent in the root endosphere colonization by Kosakonia sp.KO348. And K0348 can secret VgrGs. |
| References | [1] Mosquito S, Bertani I, Licastro D, Compant S, Myers MP, Hinarejos E, Levy A, Venturi V. et al (2020) In Planta Colonization and Role of T6SS in Two Rice Kosakonia Endophytes.. Mol Plant Microbe Interact. 33(2):349-363. [PudMed:31609645] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssE | TssI |
| Number | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| UG97_RS15945 | 106545..107177 | + | 633 | 780197508 | DNA-binding protein | ||
| T6CP015940 | TssB | UG97_RS15950 (tssB) | 107454..107951 | + | 498 | 780197513 | type VI secretion system contractile sheath small subunit |
| T6CP015941 | TssC | UG97_RS15955 (tssC) | 107984..109531 | + | 1548 | 780197517 | type VI secretion system contractile sheath large subunit |
| UG97_RS15960 (tssK) | 109550..110554 | + | 1005 | pseudogene | type VI secretion system baseplate subunit TssK | ||
| UG97_RS25485 | 110636..111730 | + | 1095 | 1790934135 | hypothetical protein | ||
| UG97_RS24375 | 112062..112325 | + | 264 | 1110699342 | PAAR domain-containing protein | ||
| T6CP015943 | TssI | UG97_RS15975 (vgrG) | 112462..113949 | + | 1488 | pseudogene | type VI secretion system tip protein VgrG |
| UG97_RS15980 | 113952..114437 | + | 486 | 919124186 | DUF4123 domain-containing protein | ||
| UG97_RS15985 | 114470..115279 | + | 810 | 780197533 | hypothetical protein | ||
| UG97_RS25290 | 115499..115792 | + | 294 | 1724533550 | hypothetical protein | ||
| UG97_RS15995 | 115776..116513 | + | 738 | 780197541 | hypothetical protein | ||
| UG97_RS24885 | 116617..116943 | + | 327 | pseudogene | DUF2345 domain-containing protein | ||
| UG97_RS16005 | 117141..117683 | + | 543 | 780197546 | DUF3304 domain-containing protein | ||
| UG97_RS16010 | 117683..117883 | + | 201 | 780197550 | hypothetical protein | ||
| T6CP015944 | TssE | UG97_RS16015 (tssE) | 118544..118993 | + | 450 | 780197555 | type VI secretion system baseplate subunit TssE |
| T6CP015945 | TssA | UG97_RS16020 | 119369..120808 | + | 1440 | 780197559 | type VI secretion system ImpA family N-terminal domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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