Detailed information of component protein
Summary
| Component ID | T6CP015940 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01283  (Type i2) |
| Strain | Kosakonia oryzae strain KO348 |
| Replicon | chromosome |
| Sequence | Protein sequence (166 a.a.); Nucleotide sequence (498 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | UG97_RS15950 |
| Coordinate (Strand) | 107454..107951 (+) |
| NCBI ID | WP_045512209.1 |
| RefSeq | NZ_JZLI01000015 |
| Uniprot ID | UPI0005F061D3 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 5.3e-50 | 7..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-165 | MSDSFQREIPKARINLKLDLHTGGAQKKTELPLKLLVTGDFSNGQETASLSERVKVNVNKNNFNSVLSDYSPKVNLIVENTLAGNASEENISLTFRDMKDFTPEEVARQIPQLKAMLAMRNLLRDLKANLLDNQTFRKELEKILLNPSLSAELRDELSSLAPKQP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9912 | - | - |
Protein sequence: 166 a.a.
>T6CP015940 NZ_JZLI01000015:107454-107951 [Kosakonia oryzae] [TssB]
MSDSFQREIPKARINLKLDLHTGGAQKKTELPLKLLVTGDFSNGQETASLSERVKVNVNKNNFNSVLSDYSPKVNLIVEN
TLAGNASEENISLTFRDMKDFTPEEVARQIPQLKAMLAMRNLLRDLKANLLDNQTFRKELEKILLNPSLSAELRDELSSL
APKQP*
MSDSFQREIPKARINLKLDLHTGGAQKKTELPLKLLVTGDFSNGQETASLSERVKVNVNKNNFNSVLSDYSPKVNLIVEN
TLAGNASEENISLTFRDMKDFTPEEVARQIPQLKAMLAMRNLLRDLKANLLDNQTFRKELEKILLNPSLSAELRDELSSL
APKQP*
Nucleotide sequence: 498 bp
>T6CP015940 NZ_JZLI01000015:107454-107951 [Kosakonia oryzae] [TssB]
ATGAGCGATAGCTTCCAGCGGGAGATACCGAAAGCACGTATCAACCTGAAACTCGACCTGCATACGGGCGGAGCACAGAA
AAAAACAGAATTACCGTTGAAATTACTGGTGACGGGTGATTTTAGTAATGGGCAGGAAACGGCGTCTTTAAGCGAACGCG
TTAAAGTCAACGTTAATAAAAATAACTTTAATAGTGTTCTTTCTGATTATTCCCCAAAAGTTAACCTTATTGTTGAAAAT
ACCCTGGCGGGTAATGCCAGCGAAGAGAATATCAGCTTGACGTTCCGCGATATGAAAGATTTCACGCCAGAAGAGGTTGC
CCGCCAAATTCCCCAGCTCAAAGCGATGCTGGCAATGCGCAATCTGCTTCGCGATCTGAAAGCGAACTTACTCGATAATC
AGACTTTCCGAAAGGAATTAGAAAAAATTCTTCTTAACCCCTCTCTCAGCGCAGAACTGCGTGATGAGCTCTCCTCTCTT
GCGCCCAAACAGCCATAA
ATGAGCGATAGCTTCCAGCGGGAGATACCGAAAGCACGTATCAACCTGAAACTCGACCTGCATACGGGCGGAGCACAGAA
AAAAACAGAATTACCGTTGAAATTACTGGTGACGGGTGATTTTAGTAATGGGCAGGAAACGGCGTCTTTAAGCGAACGCG
TTAAAGTCAACGTTAATAAAAATAACTTTAATAGTGTTCTTTCTGATTATTCCCCAAAAGTTAACCTTATTGTTGAAAAT
ACCCTGGCGGGTAATGCCAGCGAAGAGAATATCAGCTTGACGTTCCGCGATATGAAAGATTTCACGCCAGAAGAGGTTGC
CCGCCAAATTCCCCAGCTCAAAGCGATGCTGGCAATGCGCAATCTGCTTCGCGATCTGAAAGCGAACTTACTCGATAATC
AGACTTTCCGAAAGGAATTAGAAAAAATTCTTCTTAACCCCTCTCTCAGCGCAGAACTGCGTGATGAGCTCTCCTCTCTT
GCGCCCAAACAGCCATAA