Detailed information of component protein


Summary

Component ID T6CP015945
Component protein type TssA
T6SS ID (Type) T6SS01283 experimental (Type i2)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (480 a.a.); Nucleotide sequence (1440 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS16020
Coordinate (Strand) 119369..120808 (+)
NCBI ID 780197559
RefSeq NZ_JZLI01000015
Uniprot ID UPI0005EF39DB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 6e-43 314..454
ImpA_N PF06812.14 4.9e-20 10..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-479 MNDISPRKIKTGCDPRTLADYAILRDELSKLTHPARPDVNWRYVEKLCLSLFEQNGVELQTAAWYTLARTQLAGLFGLNEGLAILEALISHQWGVLWPQPVHARMEILSNLSQRLQQRMRTLPLNYSDLSQLYRAEQLLTSLGAVLQRLELKHLSQLDTLRSMIHNSAVRLENSDGASDSGATIQAGIVLPAPVMNSAGILSDALPGIPVTEKREPANTVNWVYVAHPEHQPNVDVLTAMPVQVKKWKPFAAGMCTMLIISAATVWGWHALHRLDPLQTQLAASLAPLPAILTPAQLDTLRQHAPIPQTMFTATQQQLVRLGQLPPDWNINYSRQLVEQAQSLWPEQAKPLAQRWFRQLNAASVPTENLSGWHQGMTKLQQLSNRLSGLDGHKGKYMTVSELKSSVFGMMTSFQQTEPTEEQLRQINLLPVASPLRQQLIRQLEQHLRAQIYTLGQMKNSAPVTKLLREQAVNPSPLND


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9941 - -


  Protein sequence: 480 a.a.    

>T6CP015945 NZ_JZLI01000015:119369-120808 [Kosakonia oryzae] [TssA]
MNDISPRKIKTGCDPRTLADYAILRDELSKLTHPARPDVNWRYVEKLCLSLFEQNGVELQTAAWYTLARTQLAGLFGLNE
GLAILEALISHQWGVLWPQPVHARMEILSNLSQRLQQRMRTLPLNYSDLSQLYRAEQLLTSLGAVLQRLELKHLSQLDTL
RSMIHNSAVRLENSDGASDSGATIQAGIVLPAPVMNSAGILSDALPGIPVTEKREPANTVNWVYVAHPEHQPNVDVLTAM
PVQVKKWKPFAAGMCTMLIISAATVWGWHALHRLDPLQTQLAASLAPLPAILTPAQLDTLRQHAPIPQTMFTATQQQLVR
LGQLPPDWNINYSRQLVEQAQSLWPEQAKPLAQRWFRQLNAASVPTENLSGWHQGMTKLQQLSNRLSGLDGHKGKYMTVS
ELKSSVFGMMTSFQQTEPTEEQLRQINLLPVASPLRQQLIRQLEQHLRAQIYTLGQMKNSAPVTKLLREQAVNPSPLND*

  Nucleotide sequence: 1440 bp    

>T6CP015945 NZ_JZLI01000015:119369-120808 [Kosakonia oryzae] [TssA]
ATGAATGACATTTCCCCCCGTAAAATCAAAACCGGTTGCGACCCGCGTACTCTTGCGGATTATGCCATCCTGCGCGATGA
GTTGAGCAAACTGACCCACCCGGCGCGCCCGGACGTGAACTGGCGGTATGTAGAAAAACTCTGTCTCTCACTGTTTGAGC
AAAATGGCGTGGAATTGCAAACGGCCGCCTGGTATACGCTTGCCCGGACTCAACTGGCCGGATTATTCGGTCTGAATGAA
GGGCTGGCGATACTGGAGGCCCTGATAAGCCATCAGTGGGGAGTGCTCTGGCCGCAGCCTGTACACGCCCGCATGGAAAT
CCTCAGTAACCTGAGTCAACGCCTGCAGCAACGGATGCGTACGCTACCGCTGAACTACAGCGATCTCAGCCAGCTATACC
GGGCGGAACAACTGCTAACGAGTCTCGGCGCGGTGCTACAGCGCCTGGAGTTAAAACATCTGAGCCAGCTCGATACGTTG
CGATCGATGATACATAACAGTGCTGTTCGGCTGGAAAATAGTGACGGCGCATCCGACTCTGGTGCAACTATTCAGGCTGG
TATCGTGCTGCCTGCACCAGTAATGAATAGCGCCGGAATATTAAGTGATGCTCTGCCGGGTATTCCTGTTACCGAAAAGC
GCGAACCGGCCAATACAGTAAATTGGGTTTATGTTGCCCATCCCGAACATCAGCCGAACGTGGATGTACTGACGGCGATG
CCGGTGCAGGTAAAAAAGTGGAAACCTTTTGCTGCCGGGATGTGCACCATGCTGATAATAAGTGCGGCGACGGTGTGGGG
CTGGCATGCCTTGCATCGACTTGACCCGTTACAGACTCAGCTTGCTGCATCGCTGGCACCTTTACCCGCAATACTCACGC
CCGCGCAACTTGATACGCTGCGTCAGCACGCTCCCATACCGCAAACCATGTTCACAGCTACGCAGCAGCAGCTCGTGCGC
TTAGGTCAGTTGCCACCGGACTGGAATATTAACTACAGCCGTCAACTAGTCGAGCAGGCGCAGTCGCTCTGGCCTGAACA
GGCGAAACCACTGGCACAACGGTGGTTTCGGCAGTTGAACGCAGCCAGCGTACCGACAGAAAATCTGAGTGGCTGGCATC
AGGGGATGACGAAGTTACAGCAACTGAGTAATCGGCTTAGTGGGCTGGATGGGCACAAGGGTAAATACATGACGGTCAGT
GAGCTGAAGTCATCCGTCTTTGGCATGATGACCAGCTTTCAGCAGACTGAACCGACGGAGGAACAGCTTCGTCAGATTAA
TTTATTGCCCGTCGCTTCTCCTCTGCGTCAGCAACTTATCCGGCAACTGGAACAGCATCTCCGGGCACAGATTTATACAC
TGGGGCAGATGAAAAACAGCGCACCTGTAACGAAGTTGCTGCGCGAACAAGCGGTAAATCCCAGCCCCCTGAACGATTAA