Detailed information of component protein


Summary

Component ID T6CP015941
Component protein type TssC
T6SS ID (Type) T6SS01283 experimental (Type i2)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (516 a.a.); Nucleotide sequence (1548 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS15955
Coordinate (Strand) 107984..109531 (+)
NCBI ID 780197517
RefSeq NZ_JZLI01000015
Uniprot ID UPI0005F07319
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.2e-120 90..390
VipB_2 PF18945.2 6.2e-39 400..510
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-515 MLMSVQNESVATGESVVLQGTQAGGVYASLFEKINLNPVTTLSALDIWQDAQAMSDATADERLTAGMQVFLECLTKSDSKVEKLDRNLIDHHIAELDYQISRQLDAVMHHEAFQAVESLWCGLKSLVDKTDFRQNVKIELLDLSKDDLRQDFEDSPEIIQSGLYKHTYIDEYDTPGGEPIAALISAYEFDASAQDVALLRNISKVSAAAHMPFIGSAGPKFFLKDAMADVAAIKDIGNYFDRAEYIKWKSFRETDDSRYIGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHDKYLWTNASFAFAANMVRSFINNGWCVQIRGPQAGGAVQDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSTQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIDDNPGFFRVKLYAIPHFQVEGMDVNLSLVSQMPKAKS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9764 - -


  Protein sequence: 516 a.a.    

>T6CP015941 NZ_JZLI01000015:107984-109531 [Kosakonia oryzae] [TssC]
MLMSVQNESVATGESVVLQGTQAGGVYASLFEKINLNPVTTLSALDIWQDAQAMSDATADERLTAGMQVFLECLTKSDSK
VEKLDRNLIDHHIAELDYQISRQLDAVMHHEAFQAVESLWCGLKSLVDKTDFRQNVKIELLDLSKDDLRQDFEDSPEIIQ
SGLYKHTYIDEYDTPGGEPIAALISAYEFDASAQDVALLRNISKVSAAAHMPFIGSAGPKFFLKDAMADVAAIKDIGNYF
DRAEYIKWKSFRETDDSRYIGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHDKYLWTNASFAFAANMVRSFINNGWC
VQIRGPQAGGAVQDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSTQKPALYDTADA
TANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIDD
NPGFFRVKLYAIPHFQVEGMDVNLSLVSQMPKAKS*

  Nucleotide sequence: 1548 bp    

>T6CP015941 NZ_JZLI01000015:107984-109531 [Kosakonia oryzae] [TssC]
ATGTTGATGTCTGTACAAAATGAAAGTGTCGCCACAGGCGAAAGCGTGGTTTTACAAGGCACGCAAGCGGGAGGTGTGTA
TGCCTCTTTATTTGAAAAAATCAATCTGAACCCGGTAACAACGCTAAGCGCGCTGGATATCTGGCAGGATGCGCAGGCGA
TGTCGGATGCAACAGCCGATGAGCGTCTGACCGCAGGGATGCAGGTGTTCCTGGAATGCCTGACAAAATCCGATTCGAAA
GTTGAAAAACTTGACCGCAATTTGATTGATCACCATATCGCAGAGCTGGATTACCAGATTAGCCGTCAACTGGATGCGGT
GATGCACCATGAGGCGTTTCAGGCAGTAGAAAGTCTGTGGTGTGGGCTGAAATCTCTGGTGGATAAAACCGATTTTCGCC
AGAACGTCAAAATCGAACTGCTCGATCTCTCCAAAGACGATCTGCGCCAGGATTTTGAAGATAGCCCCGAAATTATCCAG
AGTGGTTTATACAAACACACTTATATCGATGAATATGACACGCCGGGTGGCGAGCCCATTGCCGCGCTGATTTCTGCTTA
CGAGTTTGATGCTTCTGCGCAGGATGTCGCTTTGCTGCGCAATATTTCGAAAGTGTCTGCCGCTGCCCACATGCCGTTTA
TCGGCTCTGCGGGGCCGAAATTTTTCCTCAAGGACGCGATGGCGGACGTGGCGGCGATAAAAGATATCGGCAACTACTTT
GACCGCGCTGAGTACATCAAGTGGAAATCCTTTCGCGAGACGGACGACTCCCGCTATATCGGTCTGGTGATGCCGCGTGT
GCTTGGCCGCCTGCCATATGGCCCTGACACCGTGCCGGTACGCAGTTTCAATTATGTGGAAGAAGTGAAAGGGCCGGATC
ACGATAAATATCTGTGGACCAACGCCTCGTTCGCCTTTGCCGCCAATATGGTACGCAGCTTTATCAATAACGGTTGGTGT
GTACAAATTCGTGGCCCGCAGGCGGGCGGTGCAGTTCAGGATCTGCCTATTCACCTTTACGACCTCGGCACGGGAAATCA
GGTAAAAATCCCCTCTGAAGTGATGATCCCGGAAACGCGTGAGTTCGAGTTCGCAAATCTCGGCTTTATTCCACTGTCGT
ATTACAAAAATCGTGATTACGCCTGCTTCTTCTCCGCTAACTCCACGCAGAAACCGGCGCTGTACGATACCGCTGACGCA
ACCGCCAATAGCCGTATCAATGCGCGCCTGCCGTATATCTTCCTGCTCTCGCGTATTGCGCATTATCTGAAGCTTATTCA
GCGTGAAAACATCGGTACGACCAAAGATCGCCGATTACTGGAACTGGAGCTGAACACCTGGGTGCGCAGTCTGGTCACTG
AAATGACCGATCCGGGCGACGAGCTGCAGGCTTCCCACCCGCTGCGTGATGCCAAAGTCGTGGTGGAAGATATTGACGAT
AACCCGGGGTTCTTCCGCGTCAAACTCTATGCCATCCCGCATTTTCAGGTCGAAGGCATGGACGTCAACCTGTCACTGGT
TTCCCAGATGCCGAAGGCCAAGTCATAA