Detailed information of component protein


Summary

Component ID T6CP015943
Component protein type TssI
T6SS ID (Type) T6SS01283 experimental (Type i2)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (496 a.a.); Nucleotide sequence (1488 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS15975
Coordinate (Strand) 112462..113949 (+)
NCBI ID -
RefSeq NZ_JZLI01000015
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF2345 PF10106.11 2.3e-31 324..447
T6SS_Vgr PF13296.8 1.4e-30 197..297
Phage_base_V PF04717.14 8.7e-07 111..176
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-495 ESGAFYARLHHERELNKSARLHLFSNAAGLMPGMVLEADGSNLNDLKDGMLMTLITYRAARDTRLHMSVWGMPYSEQFCFRPQEEPRPHIHGTLPARIESREQGDIYAWLDNQGRYRVKMDFSREDAEPGYNYLWIRQAKPCSGDTYGWHTPLTDGTEVGIAYEDGDIDRPYIAHAFHDSEHQDIVTRDNRSQNILRTAAGNELRMEDLRGQEHIALTTPFGGTQLNQGHISDEQSKQRGSGFELRTDEYGVIRVAKGLFITADGQQKAVGEVLDMETALKEIDVCQQQLKALAAAAEQAQALEADIASQKAMFDQRLKPLNGMIHSHGPQGVAFTSGEHLQLAAGQNVAVNAGGDFSSGAMGNAAILAGEGVGLFARTGSLTLNASEGPVQIQAQNGAMHLSAEQKLSLISASDILFAGKKKVTLIGGGSYLVIDNGKVEYGTDMTYTRRIKRTYLTAPASLSGMMPSFSQSGICLSCLLEAAENGAPILIKGE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.5924 - -


  Protein sequence: 496 a.a.    

>T6CP015943 NZ_JZLI01000015:112462-113949 [Kosakonia oryzae] [TssI]
ESGAFYARLHHERELNKSARLHLFSNAAGLMPGMVLEADGSNLNDLKDGMLMTLITYRAARDTRLHMSVWGMPYSEQFCF
RPQEEPRPHIHGTLPARIESREQGDIYAWLDNQGRYRVKMDFSREDAEPGYNYLWIRQAKPCSGDTYGWHTPLTDGTEVG
IAYEDGDIDRPYIAHAFHDSEHQDIVTRDNRSQNILRTAAGNELRMEDLRGQEHIALTTPFGGTQLNQGHISDEQSKQRG
SGFELRTDEYGVIRVAKGLFITADGQQKAVGEVLDMETALKEIDVCQQQLKALAAAAEQAQALEADIASQKAMFDQRLKP
LNGMIHSHGPQGVAFTSGEHLQLAAGQNVAVNAGGDFSSGAMGNAAILAGEGVGLFARTGSLTLNASEGPVQIQAQNGAM
HLSAEQKLSLISASDILFAGKKKVTLIGGGSYLVIDNGKVEYGTDMTYTRRIKRTYLTAPASLSGMMPSFSQSGICLSCL
LEAAENGAPILIKGE*

  Nucleotide sequence: 1488 bp    

>T6CP015943 NZ_JZLI01000015:112462-113949 [Kosakonia oryzae] [TssI]
GAAAGCGGGGCGTTTTATGCCCGACTTCACCACGAACGCGAACTGAATAAATCCGCCAGGCTGCACCTGTTCAGCAACGC
CGCCGGGTTGATGCCGGGCATGGTGCTGGAAGCAGACGGCAGCAACCTTAATGACCTGAAAGACGGCATGCTGATGACGC
TTATCACCTATCGCGCCGCCCGCGACACGCGCTTGCATATGTCGGTATGGGGAATGCCGTACAGCGAACAGTTCTGCTTC
CGGCCACAGGAGGAACCCCGGCCACACATCCACGGCACGTTGCCGGCGCGCATTGAAAGCCGGGAGCAGGGCGATATCTA
TGCCTGGCTGGACAATCAGGGCCGTTACCGGGTGAAGATGGACTTCAGCCGCGAAGATGCGGAGCCGGGCTACAACTACC
TGTGGATACGCCAGGCGAAGCCCTGTTCCGGCGACACTTACGGCTGGCACACGCCGCTGACTGACGGCACGGAAGTTGGA
ATCGCCTATGAAGACGGTGATATCGACCGCCCGTATATTGCCCACGCCTTCCACGATTCAGAACATCAGGACATCGTCAC
CCGCGATAACCGCAGCCAGAACATCCTGCGCACGGCAGCAGGCAACGAGCTACGAATGGAAGACCTGCGTGGGCAGGAAC
ATATTGCACTCACTACGCCATTCGGCGGTACACAGCTCAACCAGGGCCATATCTCTGATGAGCAGAGCAAACAGCGGGGC
TCCGGTTTTGAACTCAGAACGGATGAATACGGCGTCATCCGCGTGGCGAAAGGACTGTTTATCACCGCTGACGGTCAGCA
GAAGGCGGTAGGGGAGGTGCTGGACATGGAAACGGCGCTGAAAGAAATCGACGTCTGCCAACAGCAACTGAAAGCTCTGG
CTGCTGCCGCAGAGCAGGCGCAGGCACTTGAAGCCGATATTGCCAGCCAGAAAGCGATGTTCGACCAGCGCCTGAAACCG
CTGAACGGGATGATTCATTCCCATGGCCCGCAAGGCGTGGCCTTCACCAGCGGCGAACATCTGCAACTGGCTGCTGGTCA
GAATGTGGCAGTGAACGCGGGGGGAGATTTCAGCAGCGGAGCGATGGGGAATGCGGCAATTCTGGCCGGAGAAGGTGTCG
GTCTGTTCGCACGAACGGGTTCACTGACGCTGAACGCCAGCGAAGGTCCGGTGCAGATCCAGGCACAGAACGGCGCAATG
CACTTATCCGCAGAACAAAAGCTGAGCCTGATATCAGCGAGCGACATACTGTTCGCCGGTAAGAAGAAGGTGACGCTGAT
CGGCGGCGGCAGCTATCTCGTCATCGACAACGGGAAGGTAGAGTACGGCACGGATATGACCTATACGCGGAGGATAAAGC
GGACGTATCTGACAGCACCAGCATCCTTGAGCGGAATGATGCCTTCGTTTAGCCAAAGTGGCATATGTTTGAGTTGTCTT
CTTGAAGCAGCAGAAAATGGTGCGCCGATACTAATTAAGGGAGAATAA