Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01207  |
| T6SS type | Type iv |
| Strain | Candidatus Amoebophilus asiaticus 5a2 |
| Replicon (RefSeq) | chromosome (NC_010830) |
| Location | 1380571..1401622 |
| Function | - |
| Comment | - |
| References | - |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | T6SSiv-Afp-like | T6SSiv-tail terminator | T6SSiv-tape measure | T6SSiv-tube2 | TssB/TssC | TssD | TssE | TssF/TssG | TssI | Unknown |
| Number | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| AASI_RS05440 (rfbD) | 1375640..1376512 | + | 873 | WP_012473167.1 | dTDP-4-dehydrorhamnose reductase | ||
| AASI_RS05445 (rfbB) | 1376518..1377531 | + | 1014 | WP_012473168.1 | dTDP-glucose 4,6-dehydratase | ||
| AASI_RS05450 | 1377644..1378630 | + | 987 | WP_012473169.1 | bifunctional phosphoglucose/phosphomannose isomerase | ||
| AASI_RS08845 | 1378617..1378754 | + | 138 | WP_012473170.1 | hypothetical protein | ||
| AASI_RS05455 | 1378885..1379961 | + | 1077 | WP_083758841.1 | hypothetical protein | ||
| AASI_RS08850 | 1380048..1380242 | - | 195 | WP_187146252.1 | hypothetical protein | ||
| T6CP015292 | Unknown | AASI_RS05460 | 1380571..1381047 | + | 477 | WP_187146253.1 | hypothetical protein |
| AASI_RS05465 (gap) | 1381115..1382110 | + | 996 | WP_012473173.1 | type I glyceraldehyde-3-phosphate dehydrogenase | ||
| AASI_RS05470 | 1382150..1382974 | - | 825 | WP_012472346.1 | IS982-like element ISCaa5 family transposase | ||
| AASI_RS05475 | 1383200..1384243 | - | 1044 | WP_012473174.1 | ankyrin repeat domain-containing protein | ||
| T6CP015293 | T6SSiv-tail terminator | AASI_RS05480 | 1384998..1385579 | + | 582 | WP_012473175.1 | DUF4255 domain-containing protein |
| T6CP015294 | T6SSiv-Afp-like | AASI_RS05485 | 1385590..1386438 | + | 849 | WP_012473176.1 | hypothetical protein |
| T6CP015295 | TssB/TssC | AASI_RS05490 | 1386461..1387957 | + | 1497 | WP_012473177.1 | phage tail sheath family protein |
| T6CP015296 | T6SSiv-Afp-like | AASI_RS05495 | 1388078..1388581 | + | 504 | WP_012473178.1 | hypothetical protein |
| T6CP015297 | T6SSiv-Afp-like | AASI_RS05500 | 1388642..1389088 | + | 447 | WP_012473179.1 | hypothetical protein |
| T6CP015298 | TssD | AASI_RS05505 | 1389108..1389572 | + | 465 | WP_012473180.1 | phage tail protein |
| T6CP015299 | T6SSiv-Afp-like | AASI_RS05510 | 1389623..1389802 | + | 180 | WP_012473181.1 | hypothetical protein |
| T6CP015300 | T6SSiv-tube2 | AASI_RS05515 | 1389821..1390954 | + | 1134 | WP_012473182.1 | hypothetical protein |
| T6CP015301 | TssI | AASI_RS05520 (vgrG) | 1391821..1393620 | + | 1800 | WP_012473183.1 | type VI secretion system tip protein VgrG |
| T6CP015302 | PAAR | AASI_RS05525 | 1393671..1393979 | + | 309 | WP_012473184.1 | PAAR domain-containing protein |
| T6CP015303 | TssE | AASI_RS05530 | 1394004..1394399 | + | 396 | WP_012473185.1 | GPW/gp25 family protein |
| T6CP015304 | TssF/TssG | AASI_RS05535 | 1394411..1396906 | + | 2496 | WP_012473186.1 | hypothetical protein |
| T6CP015305 | T6SSiv-tape measure | AASI_RS05540 | 1396913..1401622 | + | 4710 | WP_148204969.1 | hypothetical protein |
| AASI_RS08665 | 1401841..1402008 | - | 168 | WP_148204970.1 | ankyrin repeat domain-containing protein | ||
| AASI_RS08235 | 1402087..1402846 | - | 760 | pseudogene | IS5 family transposase | ||
| AASI_RS05555 | 1403291..1403791 | - | 501 | WP_012473189.1 | NADH-quinone oxidoreductase subunit C | ||
| AASI_RS05560 | 1403821..1404303 | - | 483 | WP_148204971.1 | NADH-quinone oxidoreductase subunit B | ||
| AASI_RS05565 | 1404311..1404790 | - | 480 | WP_187146254.1 | NADH-quinone oxidoreductase subunit A | ||
| AASI_RS05570 | 1404930..1405460 | - | 531 | WP_202943298.1 | sel1 repeat family protein | ||
| AASI_RS05575 | 1405492..1406151 | - | 660 | WP_044282856.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|